Variant report
| Variant | rs7165788 |
|---|---|
| Chromosome Location | chr15:92777013-92777014 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000176463 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11858064 | 1.00[ASN][1000 genomes] |
| rs16946538 | 0.82[AMR][1000 genomes] |
| rs16946552 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs16946577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17645517 | 0.83[ASN][1000 genomes] |
| rs4635293 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57510586 | 0.82[AMR][1000 genomes] |
| rs61128186 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61319661 | 0.99[ASN][1000 genomes] |
| rs7172911 | 0.84[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs7176534 | 1.00[ASN][1000 genomes] |
| rs7179984 | 0.99[ASN][1000 genomes] |
| rs7181306 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8036116 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8037526 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948621 | chr15:92688981-93158095 | Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1049561 | chr15:92758434-93097965 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
