Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92736484..92738328-chr15:92738601..92741490,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11074048	1.00[EUR][1000 genomes]
rs16946515	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16946552	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16946577	0.82[AMR][1000 genomes]
rs17645517	0.94[ASN][1000 genomes]
rs4635293	0.82[AMR][1000 genomes]
rs57246063	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57510586	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58004056	1.00[EUR][1000 genomes]
rs61128186	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61319661	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61451844	1.00[EUR][1000 genomes]
rs7165788	0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs7172650	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7172911	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7179984	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7181306	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73540481	1.00[EUR][1000 genomes]
rs8036116	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8037526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9788698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92739400-92741400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:92740800-92741400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr15:92740800-92741400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr15:92740800-92741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:92740800-92742000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:92741000-92741200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:92741000-92741400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:92741000-92741400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:92741000-92741400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr15:92741000-92741400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:92741000-92741400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr15:92741000-92741400	Enhancers	Brain Germinal Matrix	brain

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