Variant report

Variant	rs73540481
Chromosome Location	chr15:92665504-92665505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92663926..92666705-chr15:92668588..92670209,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11074048	1.00[EUR][1000 genomes]
rs16946515	1.00[EUR][1000 genomes]
rs16946538	1.00[EUR][1000 genomes]
rs57246063	1.00[EUR][1000 genomes]
rs58004056	1.00[EUR][1000 genomes]
rs61451844	1.00[EUR][1000 genomes]
rs7172650	1.00[EUR][1000 genomes]
rs9788698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3330399	chr15:92665269-92665820	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:92648200-92692600	Weak transcription	NHLF	lung
5	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
6	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
8	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
10	chr15:92661000-92667600	Weak transcription	Fetal Brain Female	brain
11	chr15:92661000-92670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
13	chr15:92661400-92665600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:92662000-92665600	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:92662000-92667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:92662000-92667800	Weak transcription	Brain Germinal Matrix	brain
17	chr15:92662200-92667000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:92662200-92667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:92662200-92673400	Weak transcription	HMEC	breast
20	chr15:92662200-92673800	Weak transcription	NHEK	skin
21	chr15:92662400-92667000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:92662800-92666800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:92663000-92677200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:92663200-92670200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:92663200-92671000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr15:92663400-92666000	Strong transcription	Primary T cells from cord blood	blood
27	chr15:92663400-92672800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:92663400-92677600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:92663400-92679200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:92663400-92679400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:92663600-92665600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr15:92663600-92665600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:92663600-92666000	Strong transcription	Adipose Nuclei	Adipose
34	chr15:92663600-92666000	Strong transcription	Brain Hippocampus Middle	brain
35	chr15:92663600-92666400	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr15:92663600-92676200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:92663800-92667200	Weak transcription	Right Atrium	heart
38	chr15:92664000-92666000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:92664000-92667000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:92664000-92670000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr15:92664000-92707000	Weak transcription	Liver	Liver
42	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
43	chr15:92664200-92665800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:92664200-92665800	Strong transcription	Brain Anterior Caudate	brain
45	chr15:92664200-92665800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:92664200-92665800	Strong transcription	Right Ventricle	heart
47	chr15:92664200-92666200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr15:92664200-92666400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:92664400-92665800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:92664400-92665800	Strong transcription	Fetal Heart	heart

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