Variant report

Variant	rs9788698
Chromosome Location	chr15:92710780-92710781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:92710664-92711025	HepG2	liver:	n/a	n/a
2	EP300	chr15:92710688-92710914	HepG2	liver:	n/a	n/a
3	CEBPB	chr15:92710658-92711022	HepG2	liver:	n/a	n/a
4	HNF4G	chr15:92710622-92710999	HepG2	liver:	n/a	chr15:92710811-92710825 chr15:92710810-92710825 chr15:92710810-92710825 chr15:92710811-92710826 chr15:92710810-92710825
5	FOXA1	chr15:92710610-92710987	HepG2	liver:	n/a	n/a
6	HNF4A	chr15:92710587-92710977	HepG2	liver:	n/a	chr15:92710810-92710825 chr15:92710811-92710825 chr15:92710810-92710825 chr15:92710810-92710825 chr15:92710810-92710825
7	HNF4A	chr15:92710655-92711060	HepG2	liver:	n/a	chr15:92710810-92710825 chr15:92710811-92710825 chr15:92710810-92710825 chr15:92710810-92710825 chr15:92710810-92710825
8	CEBPB	chr15:92710692-92710978	HepG2	liver:	n/a	n/a
9	MAX	chr15:92710663-92711201	HepG2	liver:	n/a	chr15:92711111-92711120
10	SMC3	chr15:92710733-92710972	HepG2	liver:	n/a	n/a
11	CEBPB	chr15:92710736-92710936	HepG2	liver:	n/a	n/a
12	FOXA2	chr15:92710703-92710903	HepG2	liver:	n/a	n/a
13	EP300	chr15:92710608-92711049	HepG2	liver:	n/a	n/a
14	HNF4G	chr15:92710555-92711059	HepG2	liver:	n/a	chr15:92710811-92710825 chr15:92710810-92710825 chr15:92710810-92710825 chr15:92710811-92710826 chr15:92710810-92710825
15	SP1	chr15:92710632-92711026	HepG2	liver:	n/a	chr15:92710824-92710834

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92709419..92711582-chr15:92716283..92718037,2	MCF-7	breast:
2	chr15:92690201..92691846-chr15:92709647..92712253,2	K562	blood:

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10520703	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs1060205	0.85[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs11074048	1.00[EUR][1000 genomes]
rs11631374	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs16946515	1.00[EUR][1000 genomes]
rs16946538	1.00[EUR][1000 genomes]
rs17645285	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs17696379	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs2238342	0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap]
rs2238343	0.90[CHB][hapmap];1.00[MEX][hapmap]
rs2238345	0.81[CHB][hapmap]
rs2283455	0.81[CHB][hapmap]
rs2302085	0.80[CHB][hapmap];1.00[MEX][hapmap]
rs57246063	1.00[EUR][1000 genomes]
rs58004056	1.00[EUR][1000 genomes]
rs61451844	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172650	1.00[EUR][1000 genomes]
rs7176191	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.97[ASN][1000 genomes]
rs7178880	0.80[ASN][1000 genomes]
rs73540481	1.00[EUR][1000 genomes]
rs8033384	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
3	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:92692800-92712400	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:92693200-92712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:92699000-92711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:92700600-92712600	Weak transcription	Aorta	Aorta
12	chr15:92703200-92710800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:92703400-92712800	Weak transcription	Brain Substantia Nigra	brain
14	chr15:92703600-92711000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:92703800-92712400	Weak transcription	Brain Angular Gyrus	brain
16	chr15:92704200-92713200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:92706200-92714800	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:92706400-92713400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:92706400-92714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:92706800-92711600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:92707000-92712400	Enhancers	Fetal Heart	heart
22	chr15:92707200-92713000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:92707400-92711000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:92707800-92712400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:92708000-92710800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:92708200-92711400	Weak transcription	Spleen	Spleen
28	chr15:92708200-92711600	Weak transcription	Ovary	ovary
29	chr15:92708200-92711800	Weak transcription	Primary T cells from cord blood	blood
30	chr15:92708200-92719000	Weak transcription	Lung	lung
31	chr15:92708400-92710800	Weak transcription	Gastric	stomach
32	chr15:92708600-92712000	Enhancers	HepG2	liver
33	chr15:92708600-92716000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:92709000-92715400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:92709200-92711200	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr15:92709400-92710800	Enhancers	Fetal Brain Male	brain
37	chr15:92709400-92711600	Enhancers	Left Ventricle	heart
38	chr15:92709400-92714800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:92709600-92710800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:92709600-92710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:92709600-92711000	Enhancers	Right Ventricle	heart
42	chr15:92709600-92711200	Enhancers	HSMMtube	muscle
43	chr15:92709600-92712800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr15:92709800-92710800	Enhancers	Stomach Mucosa	stomach
45	chr15:92709800-92711600	Enhancers	Fetal Intestine Large	intestine
46	chr15:92709800-92714000	Weak transcription	Esophagus	oesophagus
47	chr15:92710000-92711200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr15:92710200-92711600	Enhancers	Fetal Intestine Small	intestine
49	chr15:92710400-92710800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:92710400-92711000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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