Variant report

Variant	rs7176191
Chromosome Location	chr15:92711641-92711642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr15:92711627-92711809	HepG2	liver:	n/a	n/a
2	CEBPB	chr15:92711508-92711798	HepG2	liver:	n/a	n/a
3	CTCF	chr15:92711620-92711770	GM12873	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92690201..92691846-chr15:92709647..92712253,2	K562	blood:
2	chr15:92711407..92714704-chr15:92715302..92716979,3	K562	blood:

Variant related genes	Relation type
SLCO3A1	TF binding region
ENSG00000258761	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10520703	0.95[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs1060205	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs11631374	0.90[CHB][hapmap];0.87[CHD][hapmap];0.90[ASN][1000 genomes]
rs17645285	0.95[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs17696379	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs2238342	0.95[CHB][hapmap];0.84[CHD][hapmap]
rs2238343	0.95[CHB][hapmap]
rs2238345	0.85[CHB][hapmap]
rs2240589	0.82[CHB][hapmap]
rs2270059	0.82[CHB][hapmap]
rs2270061	0.82[CHB][hapmap]
rs2283455	0.85[CHB][hapmap]
rs61451844	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7178880	0.83[ASN][1000 genomes]
rs74028867	0.82[ASN][1000 genomes]
rs740430	0.80[ASN][1000 genomes]
rs748852	0.81[ASN][1000 genomes]
rs8033384	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9788698	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
2	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:92692800-92712400	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:92693200-92712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:92699000-92711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:92700600-92712600	Weak transcription	Aorta	Aorta
11	chr15:92703400-92712800	Weak transcription	Brain Substantia Nigra	brain
12	chr15:92703800-92712400	Weak transcription	Brain Angular Gyrus	brain
13	chr15:92704200-92713200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:92706200-92714800	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:92706400-92713400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:92706400-92714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:92707000-92712400	Enhancers	Fetal Heart	heart
18	chr15:92707200-92713000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:92707800-92712400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:92708200-92711800	Weak transcription	Primary T cells from cord blood	blood
22	chr15:92708200-92719000	Weak transcription	Lung	lung
23	chr15:92708600-92712000	Enhancers	HepG2	liver
24	chr15:92708600-92716000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:92709000-92715400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:92709400-92714800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:92709600-92712800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:92709800-92714000	Weak transcription	Esophagus	oesophagus
29	chr15:92710400-92713000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:92710800-92713600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr15:92710800-92713600	Weak transcription	Stomach Mucosa	stomach
32	chr15:92711000-92711800	Weak transcription	Right Ventricle	heart
33	chr15:92711000-92712400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:92711000-92714800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:92711400-92712000	Enhancers	Liver	Liver
36	chr15:92711600-92713400	Weak transcription	Fetal Intestine Small	intestine
37	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart

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