Variant report

Variant	rs2283455
Chromosome Location	chr15:92700197-92700198
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10520703	0.82[CHB][hapmap]
rs1060205	0.94[JPT][hapmap]
rs11631374	0.87[JPT][hapmap]
rs17645285	0.82[CHB][hapmap]
rs17696379	0.85[CHB][hapmap]
rs2238342	0.90[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2238343	0.90[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2238345	0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2238346	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2302085	0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7176191	0.85[CHB][hapmap]
rs8033384	0.85[CHB][hapmap]
rs9788698	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv524871	chr15:92690548-92704180	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
4	chr15:92664000-92707000	Weak transcription	Liver	Liver
5	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
6	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
8	chr15:92671600-92708000	Weak transcription	Gastric	stomach
9	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
10	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:92678600-92701000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr15:92684200-92701400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:92684600-92701000	Weak transcription	NHEK	skin
19	chr15:92684800-92701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:92685200-92701000	Weak transcription	HMEC	breast
21	chr15:92686000-92703200	Weak transcription	Right Atrium	heart
22	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:92687400-92705000	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:92687600-92701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:92687800-92700400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:92688400-92700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:92689200-92700200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:92689400-92702400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:92689600-92706400	Weak transcription	HSMMtube	muscle
32	chr15:92689800-92702400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:92690400-92707800	Weak transcription	Pancreas	Pancrea
34	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:92690800-92700800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:92690800-92706800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:92690800-92707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:92691000-92700800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:92691000-92701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:92691200-92701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:92691400-92701000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:92691400-92703200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:92692400-92702000	Strong transcription	Lung	lung
44	chr15:92692800-92700400	Strong transcription	Brain Hippocampus Middle	brain
45	chr15:92692800-92712400	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:92693000-92702800	Weak transcription	Fetal Heart	heart
48	chr15:92693200-92703000	Weak transcription	Brain Angular Gyrus	brain
49	chr15:92693200-92712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:92693600-92707800	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links