Variant report

Variant	rs17696379
Chromosome Location	chr15:92719832-92719833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10520703	0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1060205	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs11631374	0.90[CHB][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs17645285	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2238342	0.95[CHB][hapmap];0.80[CHD][hapmap];0.81[AMR][1000 genomes]
rs2238343	0.95[CHB][hapmap];0.81[AMR][1000 genomes]
rs2238345	0.85[CHB][hapmap]
rs2240589	0.82[CHB][hapmap]
rs2270059	0.82[CHB][hapmap]
rs2270061	0.82[CHB][hapmap]
rs2283455	0.85[CHB][hapmap]
rs61451844	0.89[ASN][1000 genomes]
rs7176191	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs748852	0.81[ASN][1000 genomes]
rs8033384	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9788698	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
2	chr15:92718400-92720400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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