Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:92718740-92718890	GM12866	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92715714..92718386-chr15:92718766..92720334,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258761	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10520703	0.81[ASN][1000 genomes]
rs10520705	0.89[EUR][1000 genomes]
rs1060205	0.87[CEU][hapmap]
rs10852168	0.85[CEU][hapmap]
rs11074043	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11630759	0.85[CEU][hapmap]
rs11631374	0.85[CEU][hapmap]
rs11633815	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11636434	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs16946485	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16946494	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17645285	0.81[ASN][1000 genomes]
rs17696379	0.81[ASN][1000 genomes]
rs2238344	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs4777722	0.83[CHB][hapmap]
rs4777728	0.85[CEU][hapmap]
rs4777733	0.85[CEU][hapmap]
rs6496900	0.84[CHB][hapmap]
rs7176191	0.81[ASN][1000 genomes]
rs7178880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74028867	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740430	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748853	0.82[CHB][hapmap]
rs748854	0.84[CHB][hapmap]
rs758134	0.83[CHB][hapmap]
rs758135	0.84[CHB][hapmap]
rs8033384	0.83[ASN][1000 genomes]
rs886912	0.84[CHB][hapmap]
rs886913	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92708200-92719000	Weak transcription	Lung	lung
3	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
4	chr15:92718400-92720400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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