Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLCO3A1-2	chr15:92714102-92715665	NONHSAT048516

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10520705	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1060205	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10852168	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10852169	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11630759	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11631373	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11631374	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs11633815	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11636434	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12441878	0.80[EUR][1000 genomes]
rs16946485	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16946494	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1990230	1.00[AFR][1000 genomes]
rs2238344	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs4777728	0.82[CEU][hapmap]
rs4777733	0.82[CEU][hapmap]
rs61248019	0.85[EUR][1000 genomes]
rs7178880	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs74028832	0.82[EUR][1000 genomes]
rs74028867	0.98[EUR][1000 genomes]
rs740430	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs748852	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92708200-92719000	Weak transcription	Lung	lung
5	chr15:92708600-92716000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:92709000-92715400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
8	chr15:92712400-92716400	Weak transcription	Fetal Heart	heart
9	chr15:92713000-92717400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:92713400-92715200	Enhancers	Liver	Liver
11	chr15:92713400-92715400	Enhancers	HepG2	liver
12	chr15:92714000-92715400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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