Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92715714..92718386-chr15:92718766..92720334,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10520703	0.81[ASN][1000 genomes]
rs10520705	0.95[EUR][1000 genomes]
rs1060205	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10852168	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10852169	0.86[EUR][1000 genomes]
rs11074043	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11630759	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11631373	0.83[EUR][1000 genomes]
rs11631374	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11633815	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11636434	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs16946485	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs16946494	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17645285	0.81[ASN][1000 genomes]
rs2238344	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs4777728	0.85[CEU][hapmap]
rs4777733	0.85[CEU][hapmap]
rs7176191	0.80[ASN][1000 genomes]
rs7178880	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74028867	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs748852	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92708200-92719000	Weak transcription	Lung	lung
4	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart

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