Variant report

Variant	rs74028867
Chromosome Location	chr15:92712636-92712637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92711407..92714704-chr15:92715302..92716979,3	K562	blood:

Variant related genes	Relation type
ENSG00000258761	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10520703	0.81[ASN][1000 genomes]
rs10520705	0.93[EUR][1000 genomes]
rs1060205	0.93[EUR][1000 genomes]
rs10852168	0.88[EUR][1000 genomes]
rs10852169	0.88[EUR][1000 genomes]
rs11074043	0.98[EUR][1000 genomes]
rs11630759	0.84[EUR][1000 genomes]
rs11631373	0.86[EUR][1000 genomes]
rs11631374	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11633815	0.98[EUR][1000 genomes]
rs11636434	0.91[EUR][1000 genomes]
rs16946485	0.98[EUR][1000 genomes]
rs16946494	0.98[EUR][1000 genomes]
rs17645285	0.81[ASN][1000 genomes]
rs2238344	0.88[EUR][1000 genomes]
rs61248019	0.83[EUR][1000 genomes]
rs7176191	0.82[ASN][1000 genomes]
rs7178880	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74028832	0.80[EUR][1000 genomes]
rs740430	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs748852	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:92703400-92712800	Weak transcription	Brain Substantia Nigra	brain
7	chr15:92704200-92713200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:92706200-92714800	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:92706400-92713400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:92706400-92714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:92707200-92713000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:92708200-92719000	Weak transcription	Lung	lung
14	chr15:92708600-92716000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:92709000-92715400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:92709400-92714800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:92709600-92712800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:92709800-92714000	Weak transcription	Esophagus	oesophagus
19	chr15:92710400-92713000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:92710800-92713600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:92710800-92713600	Weak transcription	Stomach Mucosa	stomach
22	chr15:92711000-92714800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:92711600-92713400	Weak transcription	Fetal Intestine Small	intestine
24	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
25	chr15:92712000-92713400	Weak transcription	Liver	Liver
26	chr15:92712000-92713400	Weak transcription	HepG2	liver
27	chr15:92712400-92713000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:92712400-92716400	Weak transcription	Fetal Heart	heart

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