Variant report

Variant	rs61248019
Chromosome Location	chr15:92705191-92705192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10520705	0.81[EUR][1000 genomes]
rs1060205	0.85[EUR][1000 genomes]
rs10852168	0.81[EUR][1000 genomes]
rs10852169	0.81[EUR][1000 genomes]
rs11074043	0.85[EUR][1000 genomes]
rs11630759	0.81[EUR][1000 genomes]
rs11631373	0.83[EUR][1000 genomes]
rs11631374	0.88[EUR][1000 genomes]
rs11633815	0.85[EUR][1000 genomes]
rs11636434	0.83[EUR][1000 genomes]
rs16946485	0.85[EUR][1000 genomes]
rs16946494	0.85[EUR][1000 genomes]
rs2238344	0.81[EUR][1000 genomes]
rs7178880	0.83[EUR][1000 genomes]
rs74028867	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:92664000-92707000	Weak transcription	Liver	Liver
4	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
5	chr15:92671600-92708000	Weak transcription	Gastric	stomach
6	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
7	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:92689600-92706400	Weak transcription	HSMMtube	muscle
15	chr15:92690400-92707800	Weak transcription	Pancreas	Pancrea
16	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:92690800-92706800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:92690800-92707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:92692800-92712400	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:92693200-92712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:92693600-92707800	Weak transcription	Esophagus	oesophagus
23	chr15:92696000-92705800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:92696200-92706000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:92696200-92707800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:92696800-92705800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:92697400-92705800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:92697600-92706000	Weak transcription	Fetal Stomach	stomach
29	chr15:92698600-92706400	Weak transcription	Primary T cells from cord blood	blood
30	chr15:92699000-92711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:92699800-92705200	Weak transcription	Right Ventricle	heart
32	chr15:92699800-92706000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:92700000-92705600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:92700000-92706000	Weak transcription	Ovary	ovary
35	chr15:92700400-92705600	Weak transcription	Adipose Nuclei	Adipose
36	chr15:92700600-92705800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:92700600-92712600	Weak transcription	Aorta	Aorta
38	chr15:92701600-92706400	Weak transcription	Fetal Thymus	thymus
39	chr15:92701800-92707400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr15:92702000-92705600	Weak transcription	Lung	lung
41	chr15:92702000-92706800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:92702200-92710000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:92702400-92706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:92702400-92710000	Weak transcription	NHEK	skin
45	chr15:92702600-92706000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:92702600-92707000	Weak transcription	HMEC	breast
47	chr15:92703000-92707600	Weak transcription	NHLF	lung
48	chr15:92703200-92710800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:92703400-92712800	Weak transcription	Brain Substantia Nigra	brain
50	chr15:92703600-92705800	Weak transcription	Brain Cingulate Gyrus	brain

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