Variant report

Variant	rs7178880
Chromosome Location	chr15:92711983-92711984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92690201..92691846-chr15:92709647..92712253,2	K562	blood:
2	chr15:92711407..92714704-chr15:92715302..92716979,3	K562	blood:

Variant related genes	Relation type
ENSG00000258761	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10520703	0.82[ASN][1000 genomes]
rs10520705	0.93[EUR][1000 genomes]
rs1060205	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs10852168	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs10852169	0.88[EUR][1000 genomes]
rs11074043	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11630759	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11631373	0.86[EUR][1000 genomes]
rs11631374	0.90[ASW][hapmap];0.85[CEU][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11633815	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11636434	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs16946485	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs16946494	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs17645285	0.82[ASN][1000 genomes]
rs2238344	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs4777722	0.83[CHB][hapmap]
rs4777728	0.85[CEU][hapmap]
rs4777733	0.85[CEU][hapmap]
rs61248019	0.83[EUR][1000 genomes]
rs6496900	0.83[CHB][hapmap]
rs7176191	0.83[ASN][1000 genomes]
rs74028832	0.80[EUR][1000 genomes]
rs74028867	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740430	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs748852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748853	0.81[CHB][hapmap]
rs748854	0.83[CHB][hapmap]
rs758134	0.82[CHB][hapmap]
rs758135	0.83[CHB][hapmap]
rs8033384	0.81[ASN][1000 genomes]
rs886912	0.83[CHB][hapmap]
rs886913	0.83[CHB][hapmap]
rs9788698	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
2	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:92692800-92712400	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:92693200-92712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:92700600-92712600	Weak transcription	Aorta	Aorta
10	chr15:92703400-92712800	Weak transcription	Brain Substantia Nigra	brain
11	chr15:92703800-92712400	Weak transcription	Brain Angular Gyrus	brain
12	chr15:92704200-92713200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:92706200-92714800	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:92706400-92713400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:92706400-92714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:92707000-92712400	Enhancers	Fetal Heart	heart
17	chr15:92707200-92713000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:92707800-92712400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:92708200-92719000	Weak transcription	Lung	lung
21	chr15:92708600-92712000	Enhancers	HepG2	liver
22	chr15:92708600-92716000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:92709000-92715400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:92709400-92714800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:92709600-92712800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr15:92709800-92714000	Weak transcription	Esophagus	oesophagus
27	chr15:92710400-92713000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:92710800-92713600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:92710800-92713600	Weak transcription	Stomach Mucosa	stomach
30	chr15:92711000-92712400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:92711000-92714800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:92711400-92712000	Enhancers	Liver	Liver
33	chr15:92711600-92713400	Weak transcription	Fetal Intestine Small	intestine
34	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
35	chr15:92711800-92712000	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links