Variant report

Variant	rs57510586
Chromosome Location	chr15:92746549-92746550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16946515	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16946538	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16946552	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16946577	0.82[AMR][1000 genomes]
rs17645517	0.94[ASN][1000 genomes]
rs4635293	0.82[AMR][1000 genomes]
rs57246063	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61128186	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61319661	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7165788	0.82[AMR][1000 genomes]
rs7172650	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7172911	0.94[ASN][1000 genomes]
rs7179984	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7181306	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8036116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8037526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92741400-92748200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:92741400-92748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:92741400-92748400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:92741400-92748600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:92744400-92748200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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