Variant report

Variant	rs7179984
Chromosome Location	chr15:92749060-92749061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11858064	0.99[ASN][1000 genomes]
rs16946515	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16946538	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16946552	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16946577	0.99[ASN][1000 genomes]
rs17645517	0.82[ASN][1000 genomes]
rs4635293	0.99[ASN][1000 genomes]
rs57246063	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57510586	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61128186	0.82[ASN][1000 genomes]
rs61319661	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7165788	0.99[ASN][1000 genomes]
rs7172650	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7172911	0.82[ASN][1000 genomes]
rs7176534	0.99[ASN][1000 genomes]
rs7181306	0.82[ASN][1000 genomes]
rs8036116	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8037526	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92748200-92749200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr15:92748200-92749200	Enhancers	Brain Substantia Nigra	brain
3	chr15:92748200-92749400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:92748200-92749400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr15:92748200-92749400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:92748400-92749200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:92748400-92749400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:92748400-92749400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:92748600-92749200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:92748600-92749200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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