Variant report

Variant	rs7162384
Chromosome Location	chr15:58762273-58762274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58762234..58763977-chr15:59040711..59042531,2	K562	blood:
2	chr15:58720668..58723820-chr15:58759148..58762580,3	K562	blood:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10518978	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11634902	0.93[ASN][1000 genomes]
rs12591216	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12591624	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12592407	0.91[ASN][1000 genomes]
rs12593736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12593880	0.89[ASN][1000 genomes]
rs12594222	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12595191	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12900891	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12902119	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12903955	0.86[ASN][1000 genomes]
rs12904507	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906459	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908427	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12910028	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12910602	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913605	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16940338	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17190580	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190587	0.93[ASN][1000 genomes]
rs2414581	0.91[ASN][1000 genomes]
rs28478642	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28713618	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899630	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34053638	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34225834	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34297592	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34570549	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34577128	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34744603	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35633916	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35732576	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35771822	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35795657	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4775053	0.93[ASN][1000 genomes]
rs6494009	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6494010	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6494011	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71478667	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71478668	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71478670	0.87[ASN][1000 genomes]
rs71478671	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71478672	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7162603	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165752	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7169744	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172556	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7174539	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8029592	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8029837	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8041525	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58743800-58770400	Enhancers	Fetal Thymus	thymus
2	chr15:58752800-58765000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:58755400-58765000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:58755400-58765000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:58755600-58763600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:58755800-58765800	Weak transcription	Gastric	stomach
7	chr15:58757200-58763000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:58758600-58764000	Weak transcription	Thymus	Thymus
9	chr15:58759400-58762400	Enhancers	Stomach Mucosa	stomach
10	chr15:58759400-58768400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:58759400-58770400	Enhancers	Placenta	Placenta
12	chr15:58759600-58765200	Weak transcription	Fetal Lung	lung
13	chr15:58759600-58765200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:58759800-58763800	Weak transcription	GM12878-XiMat	blood
15	chr15:58759800-58765000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:58759800-58765000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:58760400-58763600	Enhancers	NHEK	skin
18	chr15:58760400-58764400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:58760400-58770200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:58760600-58764600	Weak transcription	Spleen	Spleen
21	chr15:58760600-58765000	Weak transcription	K562	blood
22	chr15:58760600-58767000	Weak transcription	Fetal Intestine Large	intestine
23	chr15:58760800-58765000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:58760800-58765000	Weak transcription	Small Intestine	intestine
25	chr15:58760800-58765200	Enhancers	HMEC	breast
26	chr15:58761000-58762600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:58761000-58767200	Weak transcription	Fetal Intestine Small	intestine
28	chr15:58761200-58763000	Enhancers	Fetal Muscle Leg	muscle
29	chr15:58761400-58762400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:58761400-58763800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:58761400-58763800	Enhancers	NH-A	brain
32	chr15:58761400-58764400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:58761400-58764400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:58761400-58764400	Enhancers	NHDF-Ad	bronchial
35	chr15:58761400-58766600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:58761600-58762400	Enhancers	H1 Cell Line	embryonic stem cell
37	chr15:58761600-58762400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr15:58761600-58762400	Flanking Active TSS	Hela-S3	cervix
39	chr15:58761600-58762600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:58761600-58763000	Enhancers	Osteobl	bone
41	chr15:58761600-58763200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr15:58761800-58762400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:58761800-58762400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr15:58761800-58762400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr15:58761800-58762400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:58761800-58762400	Enhancers	Right Atrium	heart
47	chr15:58761800-58762800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr15:58761800-58763000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr15:58761800-58765000	Enhancers	Dnd41	blood
50	chr15:58762000-58762400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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