Variant report

Variant	rs7165752
Chromosome Location	chr15:58753470-58753471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10518978	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12591216	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12591624	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12593736	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12594222	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12595191	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12900891	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12902119	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12904507	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12906459	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12908427	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12910028	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12910602	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12913605	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16940338	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17190580	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28478642	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28713618	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2899630	0.88[AMR][1000 genomes]
rs34053638	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34225834	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34297592	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34570549	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34577128	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34744603	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35633916	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35732576	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35771822	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35795657	0.85[AMR][1000 genomes]
rs6494009	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6494010	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6494011	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71478667	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71478668	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71478671	0.88[AMR][1000 genomes]
rs71478672	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7162384	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7162603	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7169744	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7172556	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7172681	0.82[AFR][1000 genomes]
rs7174539	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8029592	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8029837	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8041525	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1043362	chr15:58726337-58756571	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58737400-58761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:58743800-58770400	Enhancers	Fetal Thymus	thymus
3	chr15:58747600-58754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:58747800-58754400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:58748200-58754000	Enhancers	Spleen	Spleen
6	chr15:58748400-58755000	Weak transcription	Gastric	stomach
7	chr15:58749600-58753800	Enhancers	Fetal Intestine Large	intestine
8	chr15:58749600-58755600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:58749600-58756000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr15:58749800-58753600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr15:58749800-58753600	Enhancers	HepG2	liver
12	chr15:58750200-58753800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:58750800-58754200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:58751000-58754400	Weak transcription	NHEK	skin
15	chr15:58751200-58757200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:58751400-58754200	Weak transcription	HMEC	breast
17	chr15:58751600-58757800	Weak transcription	Fetal Kidney	kidney
18	chr15:58752000-58754600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:58752000-58755200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:58752000-58757800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:58752000-58757800	Weak transcription	NHLF	lung
22	chr15:58752200-58754600	Weak transcription	Liver	Liver
23	chr15:58752200-58755000	Weak transcription	Esophagus	oesophagus
24	chr15:58752200-58755000	Weak transcription	K562	blood
25	chr15:58752200-58755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:58752400-58754200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:58752400-58754400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr15:58752400-58754800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:58752400-58755200	Weak transcription	Small Intestine	intestine
30	chr15:58752400-58756400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:58752400-58761800	Weak transcription	Right Atrium	heart
32	chr15:58752600-58754200	Weak transcription	Stomach Mucosa	stomach
33	chr15:58752600-58754400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:58752600-58755000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:58752600-58760200	Weak transcription	Hela-S3	cervix
36	chr15:58752800-58754600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr15:58752800-58754600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:58752800-58754600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:58752800-58754600	Weak transcription	Fetal Intestine Small	intestine
40	chr15:58752800-58754600	Weak transcription	A549	lung
41	chr15:58752800-58754800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:58752800-58754800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:58752800-58755200	Weak transcription	Dnd41	blood
44	chr15:58752800-58755400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:58752800-58757800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:58752800-58757800	Weak transcription	HSMM	muscle
47	chr15:58752800-58765000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:58753000-58753600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:58753000-58754200	Weak transcription	Primary T cells from cord blood	blood
50	chr15:58753000-58754200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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