Variant report

Variant	rs7164282
Chromosome Location	chr15:42636015-42636016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16972772	1.00[EUR][1000 genomes]
rs16972775	1.00[EUR][1000 genomes]
rs16972973	1.00[EUR][1000 genomes]
rs16972983	1.00[EUR][1000 genomes]
rs16972993	1.00[EUR][1000 genomes]
rs16973003	1.00[EUR][1000 genomes]
rs16973006	1.00[EUR][1000 genomes]
rs16973103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973233	1.00[EUR][1000 genomes]
rs28364353	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28364361	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28364362	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28364364	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28364375	1.00[EUR][1000 genomes]
rs28364412	1.00[EUR][1000 genomes]
rs28364442	1.00[EUR][1000 genomes]
rs28364445	1.00[EUR][1000 genomes]
rs28364450	1.00[EUR][1000 genomes]
rs28364499	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs28402077	1.00[EUR][1000 genomes]
rs59897576	1.00[EUR][1000 genomes]
rs61735534	1.00[EUR][1000 genomes]
rs6493032	1.00[EUR][1000 genomes]
rs7163294	1.00[EUR][1000 genomes]
rs7172064	1.00[EUR][1000 genomes]
rs7183741	1.00[EUR][1000 genomes]
rs8024306	1.00[AMR][1000 genomes]
rs8026177	1.00[EUR][1000 genomes]
rs8031541	1.00[EUR][1000 genomes]
rs8037390	1.00[EUR][1000 genomes]
rs8037485	1.00[EUR][1000 genomes]
rs8037624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041101	1.00[AMR][1000 genomes]
rs8041155	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9672364	1.00[EUR][1000 genomes]
rs9745221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
2	chr15:42603400-42648600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:42603400-42648600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:42604000-42639400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:42604600-42651200	Weak transcription	Fetal Kidney	kidney
6	chr15:42616200-42636600	Weak transcription	NHEK	skin
7	chr15:42617000-42645000	Weak transcription	NHLF	lung
8	chr15:42619600-42640000	Weak transcription	NHDF-Ad	bronchial
9	chr15:42619600-42647200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:42619600-42656200	Weak transcription	HMEC	breast
11	chr15:42626800-42643400	Weak transcription	Fetal Thymus	thymus
12	chr15:42627600-42654600	Weak transcription	HSMM	muscle
13	chr15:42627800-42636600	Weak transcription	Osteobl	bone
14	chr15:42627800-42643800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:42628000-42640000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:42628600-42636400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:42629000-42638200	Weak transcription	GM12878-XiMat	blood
18	chr15:42630600-42650600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:42630800-42646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:42631600-42648600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:42631600-42649800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:42631800-42643400	Weak transcription	HSMMtube	muscle
23	chr15:42631800-42649400	Weak transcription	Fetal Brain Male	brain
24	chr15:42631800-42651000	Weak transcription	Fetal Heart	heart
25	chr15:42632200-42639600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:42632200-42652600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:42633400-42638200	Weak transcription	Fetal Lung	lung
28	chr15:42633600-42638200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:42633600-42643400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:42633800-42636600	Strong transcription	Fetal Intestine Small	intestine
31	chr15:42633800-42640400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:42634000-42637000	Strong transcription	Fetal Muscle Leg	muscle
33	chr15:42634000-42639200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:42634200-42641800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr15:42634400-42636600	Strong transcription	Aorta	Aorta
36	chr15:42634400-42636600	Strong transcription	Lung	lung
37	chr15:42634400-42637200	Strong transcription	Ovary	ovary
38	chr15:42634400-42644600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:42634600-42636800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:42634600-42636800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:42634600-42636800	Strong transcription	Pancreas	Pancrea
42	chr15:42634600-42637000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:42634600-42637000	Strong transcription	Fetal Stomach	stomach
44	chr15:42634600-42637200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:42634600-42637400	Strong transcription	Primary T cells from cord blood	blood
46	chr15:42634600-42638400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:42634600-42638400	Enhancers	Psoas Muscle	Psoas
48	chr15:42634600-42640800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:42634600-42640800	Strong transcription	Fetal Intestine Large	intestine
50	chr15:42634600-42641600	Strong transcription	Stomach Smooth Muscle	stomach

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