Variant report

Variant	rs8041155
Chromosome Location	chr15:42622419-42622420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs16972704	1.00[EUR][1000 genomes]
rs16972772	1.00[EUR][1000 genomes]
rs16972775	1.00[EUR][1000 genomes]
rs16972973	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972983	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972993	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973003	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973103	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16973149	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16973183	1.00[EUR][1000 genomes]
rs16973203	1.00[EUR][1000 genomes]
rs16973233	1.00[EUR][1000 genomes]
rs28364353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364366	1.00[AMR][1000 genomes]
rs28364375	1.00[EUR][1000 genomes]
rs28364412	1.00[EUR][1000 genomes]
rs28364442	1.00[EUR][1000 genomes]
rs28364445	1.00[EUR][1000 genomes]
rs28364450	1.00[EUR][1000 genomes]
rs28364499	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs28402077	1.00[EUR][1000 genomes]
rs59897576	1.00[EUR][1000 genomes]
rs61735534	1.00[EUR][1000 genomes]
rs6493032	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164282	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7172064	1.00[EUR][1000 genomes]
rs7183741	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026177	1.00[EUR][1000 genomes]
rs8031541	1.00[EUR][1000 genomes]
rs8037390	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037624	1.00[EUR][1000 genomes]
rs8042890	1.00[AMR][1000 genomes]
rs9672364	1.00[EUR][1000 genomes]
rs9745221	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
2	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
3	chr15:42568600-42630800	Weak transcription	Dnd41	blood
4	chr15:42573400-42635800	Weak transcription	Gastric	stomach
5	chr15:42585400-42623600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:42596800-42625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:42600400-42626400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:42600600-42627200	Weak transcription	Fetal Brain Female	brain
9	chr15:42601200-42636000	Weak transcription	Brain Germinal Matrix	brain
10	chr15:42603200-42627200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:42603200-42636000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:42603400-42623200	Weak transcription	Brain Angular Gyrus	brain
13	chr15:42603400-42648600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:42603400-42648600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:42604000-42639400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:42604600-42651200	Weak transcription	Fetal Kidney	kidney
17	chr15:42606200-42634600	Weak transcription	Pancreas	Pancrea
18	chr15:42613000-42623800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:42613000-42624000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:42613000-42624000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:42613400-42624200	Strong transcription	Primary B cells from cord blood	blood
22	chr15:42613400-42626400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr15:42613600-42623800	Strong transcription	Adipose Nuclei	Adipose
24	chr15:42613800-42623800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:42614000-42623800	Strong transcription	Liver	Liver
26	chr15:42614200-42623800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:42614200-42624600	Weak transcription	HUVEC	blood vessel
28	chr15:42614200-42624800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:42614800-42627200	Weak transcription	Psoas Muscle	Psoas
30	chr15:42615000-42627200	Weak transcription	Fetal Intestine Small	intestine
31	chr15:42615600-42623000	Weak transcription	Esophagus	oesophagus
32	chr15:42615600-42625600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:42615600-42629000	Weak transcription	Right Ventricle	heart
34	chr15:42615600-42631800	Weak transcription	Lung	lung
35	chr15:42616200-42634600	Weak transcription	Fetal Stomach	stomach
36	chr15:42616200-42636600	Weak transcription	NHEK	skin
37	chr15:42616600-42623400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:42616800-42623400	Weak transcription	HSMMtube	muscle
39	chr15:42616800-42624400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:42616800-42636000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:42617000-42645000	Weak transcription	NHLF	lung
42	chr15:42617800-42623600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:42618000-42636000	Weak transcription	Colonic Mucosa	Colon
44	chr15:42618200-42623600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:42618400-42623800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:42618600-42634800	Weak transcription	Placenta	Placenta
47	chr15:42619400-42623600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:42619400-42626600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:42619600-42623000	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:42619600-42623000	Weak transcription	Stomach Smooth Muscle	stomach

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