Variant report

Variant	rs8031541
Chromosome Location	chr15:42705597-42705598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42698233..42703312-chr15:42703479..42708352,6	K562	blood:
2	chr15:42692271..42694761-chr15:42703745..42705651,2	K562	blood:
3	chr15:42699538..42703312-chr15:42704209..42708483,5	K562	blood:

Variant related genes	Relation type
ENSG00000092529	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1062016	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1142536	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12102204	0.95[ASN][1000 genomes]
rs16972973	1.00[EUR][1000 genomes]
rs16972983	1.00[EUR][1000 genomes]
rs16972993	1.00[EUR][1000 genomes]
rs16973003	1.00[EUR][1000 genomes]
rs16973006	1.00[EUR][1000 genomes]
rs16973103	1.00[EUR][1000 genomes]
rs16973149	1.00[EUR][1000 genomes]
rs16973183	1.00[EUR][1000 genomes]
rs16973203	1.00[EUR][1000 genomes]
rs16973233	1.00[EUR][1000 genomes]
rs16973395	1.00[EUR][1000 genomes]
rs28364353	1.00[EUR][1000 genomes]
rs28364361	1.00[EUR][1000 genomes]
rs28364362	1.00[EUR][1000 genomes]
rs28364364	1.00[EUR][1000 genomes]
rs28364375	1.00[EUR][1000 genomes]
rs28364412	1.00[EUR][1000 genomes]
rs28364442	1.00[EUR][1000 genomes]
rs28364445	1.00[EUR][1000 genomes]
rs28364450	1.00[EUR][1000 genomes]
rs28364462	0.95[ASN][1000 genomes]
rs28364472	0.95[ASN][1000 genomes]
rs28364473	0.87[ASN][1000 genomes]
rs28364495	0.95[ASN][1000 genomes]
rs28364498	0.95[ASN][1000 genomes]
rs28364499	1.00[EUR][1000 genomes]
rs28364504	0.95[ASN][1000 genomes]
rs28364511	0.82[ASN][1000 genomes]
rs28364519	0.98[ASN][1000 genomes]
rs28364522	0.98[ASN][1000 genomes]
rs28364523	0.93[ASN][1000 genomes]
rs28364524	0.98[ASN][1000 genomes]
rs28364526	0.98[ASN][1000 genomes]
rs28364557	1.00[ASN][1000 genomes]
rs28364559	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28364560	1.00[GIH][hapmap]
rs28402077	1.00[EUR][1000 genomes]
rs28602748	0.95[ASN][1000 genomes]
rs28621687	0.95[ASN][1000 genomes]
rs28726153	0.95[ASN][1000 genomes]
rs3803342	0.95[ASN][1000 genomes]
rs61735534	1.00[EUR][1000 genomes]
rs62022303	0.95[ASN][1000 genomes]
rs62022305	0.95[ASN][1000 genomes]
rs6493032	1.00[EUR][1000 genomes]
rs6493046	0.95[ASN][1000 genomes]
rs7163294	1.00[EUR][1000 genomes]
rs7164282	1.00[EUR][1000 genomes]
rs7168121	0.95[ASN][1000 genomes]
rs7172064	1.00[EUR][1000 genomes]
rs7178396	1.00[ASN][1000 genomes]
rs7183741	1.00[EUR][1000 genomes]
rs8026177	1.00[EUR][1000 genomes]
rs8037390	1.00[EUR][1000 genomes]
rs8037485	1.00[EUR][1000 genomes]
rs8037624	1.00[EUR][1000 genomes]
rs8041155	1.00[EUR][1000 genomes]
rs8042603	0.95[ASN][1000 genomes]
rs9745221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42678600-42706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:42679000-42706800	Weak transcription	Right Atrium	heart
3	chr15:42689000-42712400	Weak transcription	Fetal Brain Male	brain
4	chr15:42689800-42706600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:42692600-42708400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:42694600-42750600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:42694800-42706800	Weak transcription	GM12878-XiMat	blood
8	chr15:42694800-42708400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:42695000-42716000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:42695400-42706200	Weak transcription	NH-A	brain
11	chr15:42697000-42706400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:42697000-42708400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:42697200-42707800	Weak transcription	K562	blood
14	chr15:42698400-42705600	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:42698400-42707000	Weak transcription	Hela-S3	cervix
16	chr15:42698400-42708400	Weak transcription	Fetal Kidney	kidney
17	chr15:42698600-42738400	Strong transcription	Fetal Muscle Leg	muscle
18	chr15:42699200-42741600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr15:42700000-42732400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:42700200-42713600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:42700600-42710200	Strong transcription	Brain Anterior Caudate	brain
22	chr15:42700800-42708200	Weak transcription	Stomach Mucosa	stomach
23	chr15:42700800-42732000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:42700800-42747200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:42701000-42719200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:42701000-42738800	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr15:42701400-42710200	Strong transcription	Brain Cingulate Gyrus	brain
29	chr15:42701400-42710200	Strong transcription	Brain Hippocampus Middle	brain
30	chr15:42701400-42710200	Strong transcription	Brain Substantia Nigra	brain
31	chr15:42701400-42732600	Strong transcription	Adipose Nuclei	Adipose
32	chr15:42701600-42744200	Strong transcription	Stomach Smooth Muscle	stomach
33	chr15:42701800-42705600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:42701800-42732400	Strong transcription	Fetal Intestine Large	intestine
35	chr15:42702000-42706400	Weak transcription	HepG2	liver
36	chr15:42702000-42711400	Strong transcription	Primary T cells from cord blood	blood
37	chr15:42702200-42705600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr15:42702200-42705800	Strong transcription	Right Ventricle	heart
39	chr15:42702200-42706000	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr15:42702200-42719200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:42702200-42750200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr15:42702400-42705600	Strong transcription	Placenta	Placenta
43	chr15:42702400-42710200	Strong transcription	Primary B cells from cord blood	blood
44	chr15:42702400-42732600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:42702400-42744200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:42702400-42744200	Strong transcription	Liver	Liver
47	chr15:42702600-42705600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:42702600-42707400	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:42702600-42708200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:42702600-42708400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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