Variant report

Variant	rs16973395
Chromosome Location	chr15:42912191-42912192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42898237..42899774-chr15:42911395..42914292,2	K562	blood:
2	chr15:42893466..42896264-chr15:42911429..42914221,2	K562	blood:
3	chr15:42893466..42896264-chr15:42911429..42914535,3	K562	blood:
4	chr15:42906590..42908104-chr15:42911574..42913333,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10220713	1.00[EUR][1000 genomes]
rs10220718	1.00[EUR][1000 genomes]
rs10220726	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10220875	1.00[EUR][1000 genomes]
rs1317628	1.00[EUR][1000 genomes]
rs13379871	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13380157	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13380301	1.00[EUR][1000 genomes]
rs16956991	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957002	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes]
rs16957138	1.00[EUR][1000 genomes]
rs16957164	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16957185	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16957187	1.00[EUR][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16973233	1.00[EUR][1000 genomes]
rs1877137	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs1877138	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs28364442	1.00[EUR][1000 genomes]
rs28364445	1.00[EUR][1000 genomes]
rs28364450	1.00[EUR][1000 genomes]
rs28364499	1.00[EUR][1000 genomes]
rs28402077	1.00[EUR][1000 genomes]
rs35584827	1.00[EUR][1000 genomes]
rs56894749	1.00[EUR][1000 genomes]
rs60789298	1.00[EUR][1000 genomes]
rs60832391	1.00[EUR][1000 genomes]
rs60881935	1.00[EUR][1000 genomes]
rs61682243	1.00[EUR][1000 genomes]
rs7165249	1.00[EUR][1000 genomes]
rs7172064	1.00[EUR][1000 genomes]
rs7174661	1.00[EUR][1000 genomes]
rs8031541	1.00[EUR][1000 genomes]
rs8032994	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
2	chr15:42895200-42914200	Weak transcription	HepG2	liver
3	chr15:42895200-42920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:42897800-42914600	Weak transcription	Brain Germinal Matrix	brain
5	chr15:42897800-42930200	Weak transcription	HSMM	muscle
6	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
7	chr15:42898400-42932800	Weak transcription	Esophagus	oesophagus
8	chr15:42898600-42929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:42900600-42928000	Weak transcription	Placenta	Placenta
10	chr15:42900600-42930000	Weak transcription	HMEC	breast
11	chr15:42900800-42914600	Weak transcription	HUVEC	blood vessel
12	chr15:42900800-42929800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:42901000-42921200	Weak transcription	NHDF-Ad	bronchial
14	chr15:42901000-42927800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:42901400-42928400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:42901400-42929800	Weak transcription	Brain Angular Gyrus	brain
17	chr15:42901600-42927800	Weak transcription	Adipose Nuclei	Adipose
18	chr15:42901600-42930000	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:42901600-42930400	Weak transcription	Primary B cells from cord blood	blood
20	chr15:42902200-42913000	Weak transcription	Lung	lung
21	chr15:42903200-42931000	Weak transcription	Fetal Intestine Large	intestine
22	chr15:42904000-42930200	Weak transcription	Right Ventricle	heart
23	chr15:42904200-42929800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:42904400-42921200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:42904600-42930200	Weak transcription	Aorta	Aorta
26	chr15:42908600-42914200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:42908800-42915600	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
29	chr15:42909600-42913200	Strong transcription	Fetal Stomach	stomach
30	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:42909800-42912600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr15:42910200-42914600	Weak transcription	Ovary	ovary
33	chr15:42910200-42916200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:42910200-42927800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:42910200-42929800	Weak transcription	Fetal Heart	heart
36	chr15:42910600-42920800	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:42910600-42927600	Weak transcription	Left Ventricle	heart
38	chr15:42911000-42912200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:42911000-42912200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:42911000-42912200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:42911000-42912800	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr15:42911000-42912800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:42911000-42912800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr15:42911000-42912800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr15:42911000-42920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:42911200-42912200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr15:42911200-42912600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:42911200-42912800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr15:42911400-42912800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr15:42911400-42912800	Enhancers	Primary hematopoietic stem cells	blood

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