Variant report

Variant	rs13380157
Chromosome Location	chr15:43146994-43146995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10220713	1.00[EUR][1000 genomes]
rs10220718	1.00[EUR][1000 genomes]
rs10220726	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10220812	0.84[AFR][1000 genomes]
rs10220875	1.00[EUR][1000 genomes]
rs11070384	1.00[EUR][1000 genomes]
rs11504666	1.00[EUR][1000 genomes]
rs12324436	0.81[AFR][1000 genomes]
rs1317628	1.00[EUR][1000 genomes]
rs13379871	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13380212	1.00[EUR][1000 genomes]
rs13380301	1.00[EUR][1000 genomes]
rs16956991	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957002	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes]
rs16957138	1.00[EUR][1000 genomes]
rs16957164	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957185	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957187	1.00[EUR][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16957292	1.00[EUR][1000 genomes]
rs16973395	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1877137	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs1877138	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2054388	1.00[EUR][1000 genomes]
rs28535059	1.00[EUR][1000 genomes]
rs34436896	1.00[EUR][1000 genomes]
rs35584827	1.00[EUR][1000 genomes]
rs56894749	1.00[EUR][1000 genomes]
rs57880396	1.00[EUR][1000 genomes]
rs59276064	1.00[EUR][1000 genomes]
rs60789298	1.00[EUR][1000 genomes]
rs60832391	1.00[EUR][1000 genomes]
rs60881935	1.00[EUR][1000 genomes]
rs61682243	1.00[EUR][1000 genomes]
rs7164041	1.00[EUR][1000 genomes]
rs7165249	1.00[EUR][1000 genomes]
rs7174661	1.00[EUR][1000 genomes]
rs7175062	1.00[EUR][1000 genomes]
rs8031111	1.00[EUR][1000 genomes]
rs8032994	1.00[EUR][1000 genomes]
rs9806161	1.00[EUR][1000 genomes]
rs9806313	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	esv3400306	chr15:43135709-43164903	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43064800-43150800	Weak transcription	HSMM	muscle
2	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:43075800-43159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:43089800-43165200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:43094400-43163800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:43094600-43150800	Weak transcription	Aorta	Aorta
8	chr15:43095000-43165000	Weak transcription	Spleen	Spleen
9	chr15:43103000-43165400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:43103400-43173200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:43114800-43172000	Weak transcription	Pancreas	Pancrea
12	chr15:43119600-43168200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:43119600-43172600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:43119800-43163200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr15:43119800-43170200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:43120000-43151000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:43125200-43151400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:43125400-43173600	Weak transcription	Hela-S3	cervix
19	chr15:43126000-43150600	Weak transcription	HMEC	breast
20	chr15:43131000-43165200	Weak transcription	Thymus	Thymus
21	chr15:43131600-43171800	Weak transcription	Brain Anterior Caudate	brain
22	chr15:43131800-43150800	Weak transcription	Fetal Heart	heart
23	chr15:43132000-43186800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:43132200-43150000	Weak transcription	Placenta	Placenta
25	chr15:43132200-43150800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:43132200-43155600	Weak transcription	Liver	Liver
27	chr15:43132200-43162400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:43132200-43166200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:43132400-43151600	Weak transcription	Brain Angular Gyrus	brain
30	chr15:43132400-43165400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:43132400-43172800	Weak transcription	Ovary	ovary
32	chr15:43132600-43171200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:43136400-43151400	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:43136600-43148200	Weak transcription	Fetal Lung	lung
35	chr15:43136600-43157000	Weak transcription	Adipose Nuclei	Adipose
36	chr15:43136600-43159400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:43136600-43167200	Weak transcription	Dnd41	blood
38	chr15:43136800-43148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:43136800-43149000	Weak transcription	Fetal Stomach	stomach
40	chr15:43136800-43149600	Weak transcription	Psoas Muscle	Psoas
41	chr15:43136800-43150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:43136800-43151400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:43136800-43151600	Weak transcription	Fetal Brain Female	brain
44	chr15:43136800-43165200	Weak transcription	Brain Germinal Matrix	brain
45	chr15:43136800-43169200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:43136800-43169200	Weak transcription	Fetal Intestine Small	intestine
47	chr15:43136800-43182400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:43137000-43164000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:43137200-43150200	Weak transcription	NHEK	skin
50	chr15:43137200-43150600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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