Variant report

Variant	rs13380212
Chromosome Location	chr15:43299040-43299041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43292761..43295218-chr15:43297989..43300121,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10048057	0.87[AFR][1000 genomes]
rs10220713	1.00[EUR][1000 genomes]
rs10220718	1.00[EUR][1000 genomes]
rs10220726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220875	1.00[EUR][1000 genomes]
rs11070384	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317628	1.00[EUR][1000 genomes]
rs13379871	1.00[EUR][1000 genomes]
rs13380157	1.00[EUR][1000 genomes]
rs13380301	1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes]
rs16957138	1.00[EUR][1000 genomes]
rs16957164	1.00[EUR][1000 genomes]
rs16957185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957187	1.00[EUR][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16957292	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306127	1.00[ASN][1000 genomes]
rs2306128	1.00[ASN][1000 genomes]
rs28535059	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34436896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56894749	1.00[EUR][1000 genomes]
rs57880396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59276064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60789298	1.00[EUR][1000 genomes]
rs60832391	1.00[EUR][1000 genomes]
rs60881935	1.00[EUR][1000 genomes]
rs61682243	1.00[EUR][1000 genomes]
rs7164041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165249	1.00[EUR][1000 genomes]
rs7174661	1.00[EUR][1000 genomes]
rs7175062	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495345	1.00[ASN][1000 genomes]
rs8031111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032994	1.00[EUR][1000 genomes]
rs9806161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
14	nsv904137	chr15:43268970-43392075	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv904138	chr15:43268970-43414673	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
17	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
18	nsv904140	chr15:43276345-43385147	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv904141	chr15:43276345-43392075	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv904142	chr15:43276345-43403955	Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
21	nsv904143	chr15:43276345-43414673	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
23	esv3384283	chr15:43280479-43380788	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv904145	chr15:43286746-43392075	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
25	nsv904146	chr15:43294218-43414673	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:43248000-43320600	Weak transcription	Stomach Mucosa	stomach
3	chr15:43267200-43323000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:43269000-43312800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:43269200-43397200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:43269600-43300200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:43269800-43314800	Weak transcription	Fetal Brain Male	brain
8	chr15:43269800-43335200	Weak transcription	Small Intestine	intestine
9	chr15:43270400-43300600	Weak transcription	K562	blood
10	chr15:43276800-43300200	Weak transcription	HepG2	liver
11	chr15:43277000-43307800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:43279600-43300400	Weak transcription	Aorta	Aorta
13	chr15:43279600-43300400	Weak transcription	Esophagus	oesophagus
14	chr15:43281400-43299200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:43281600-43300000	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:43281800-43300400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:43282000-43300400	Weak transcription	NHLF	lung
18	chr15:43282600-43301400	Weak transcription	Psoas Muscle	Psoas
19	chr15:43287400-43346000	Weak transcription	A549	lung
20	chr15:43288000-43300400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:43288800-43300400	Weak transcription	GM12878-XiMat	blood
22	chr15:43289400-43300400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:43289800-43307800	Weak transcription	Hela-S3	cervix
24	chr15:43291600-43306200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:43292000-43300200	Weak transcription	NHEK	skin
26	chr15:43292000-43316000	Weak transcription	Fetal Heart	heart
27	chr15:43293200-43301000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:43293200-43307400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:43293400-43306000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:43294000-43306000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr15:43294200-43306200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:43294400-43301200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr15:43294400-43303400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:43294400-43304200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:43294400-43306200	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:43294600-43300600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr15:43295800-43303000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:43296200-43299200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:43296200-43300400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:43296200-43300400	Weak transcription	Pancreas	Pancrea
41	chr15:43296200-43312800	Weak transcription	HMEC	breast
42	chr15:43296400-43299400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:43296400-43300000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:43296400-43300200	Weak transcription	Fetal Brain Female	brain
45	chr15:43296400-43300400	Weak transcription	HSMMtube	muscle
46	chr15:43296400-43301000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:43296400-43302000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:43296400-43302400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:43296800-43300400	Weak transcription	Gastric	stomach
50	chr15:43296800-43306800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links