Variant report

Variant	rs60789298
Chromosome Location	chr15:43095657-43095658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43094398..43098116-chr15:43199741..43201552,3	K562	blood:

Variant related genes	Relation type
ENSG00000128881	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10220713	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10220718	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10220726	1.00[EUR][1000 genomes]
rs10220875	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10438302	0.94[ASN][1000 genomes]
rs11070381	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11070384	1.00[EUR][1000 genomes]
rs11504666	1.00[EUR][1000 genomes]
rs1317628	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13379871	1.00[EUR][1000 genomes]
rs13380157	1.00[EUR][1000 genomes]
rs13380212	1.00[EUR][1000 genomes]
rs13380301	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16956991	1.00[EUR][1000 genomes]
rs16957002	1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16957138	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16957164	1.00[EUR][1000 genomes]
rs16957178	0.90[ASN][1000 genomes]
rs16957185	1.00[EUR][1000 genomes]
rs16957187	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16957224	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16957292	1.00[EUR][1000 genomes]
rs16973395	1.00[EUR][1000 genomes]
rs1877137	1.00[EUR][1000 genomes]
rs1877138	1.00[EUR][1000 genomes]
rs2054388	1.00[EUR][1000 genomes]
rs28535059	1.00[EUR][1000 genomes]
rs34348991	0.85[ASN][1000 genomes]
rs34436896	1.00[EUR][1000 genomes]
rs35584827	1.00[EUR][1000 genomes]
rs56894749	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57880396	1.00[EUR][1000 genomes]
rs58506324	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58754188	0.94[ASN][1000 genomes]
rs58756153	0.94[ASN][1000 genomes]
rs59276064	1.00[EUR][1000 genomes]
rs60752181	0.87[ASN][1000 genomes]
rs60807675	0.85[ASN][1000 genomes]
rs60832391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60881935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61682243	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164041	1.00[EUR][1000 genomes]
rs7165249	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7174661	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7175062	1.00[EUR][1000 genomes]
rs7177501	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8031111	1.00[EUR][1000 genomes]
rs8032994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8039438	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9806161	1.00[EUR][1000 genomes]
rs9806313	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv974564	chr15:43092730-43095751	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43053600-43112200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:43056800-43116800	Weak transcription	HepG2	liver
4	chr15:43057600-43107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:43060800-43122200	Weak transcription	GM12878-XiMat	blood
6	chr15:43063400-43136200	Weak transcription	Psoas Muscle	Psoas
7	chr15:43064000-43114200	Weak transcription	Fetal Kidney	kidney
8	chr15:43064800-43150800	Weak transcription	HSMM	muscle
9	chr15:43066600-43097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:43075400-43135800	Weak transcription	HSMMtube	muscle
13	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:43075800-43117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:43075800-43119200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:43075800-43124800	Weak transcription	Hela-S3	cervix
17	chr15:43075800-43134800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:43075800-43159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:43077400-43102200	Weak transcription	Fetal Brain Male	brain
20	chr15:43089200-43096800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:43089400-43101800	Weak transcription	NH-A	brain
22	chr15:43089400-43104000	Weak transcription	NHDF-Ad	bronchial
23	chr15:43089400-43105800	Weak transcription	Osteobl	bone
24	chr15:43089600-43118400	Weak transcription	HMEC	breast
25	chr15:43089800-43102400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:43089800-43165200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:43091000-43096600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:43091400-43103000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:43091800-43135400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:43092400-43097800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:43092600-43095800	Strong transcription	Brain Hippocampus Middle	brain
32	chr15:43092600-43098000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:43092600-43098600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:43092600-43105000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr15:43092800-43096000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:43092800-43096000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr15:43092800-43096200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr15:43092800-43098000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:43093000-43095800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:43093000-43095800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:43093000-43095800	Strong transcription	Fetal Stomach	stomach
42	chr15:43093000-43096000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:43093000-43096000	Strong transcription	Liver	Liver
44	chr15:43093000-43096000	Strong transcription	Placenta	Placenta
45	chr15:43093000-43096200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:43093000-43096200	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr15:43093000-43096200	Strong transcription	Lung	lung
48	chr15:43093000-43096600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr15:43093000-43111800	Weak transcription	Fetal Heart	heart
50	chr15:43093000-43124600	Weak transcription	Small Intestine	intestine

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