Variant report

Variant	rs59276064
Chromosome Location	chr15:43211834-43211835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43029256..43031403-chr15:43210732..43214178,4	K562	blood:
2	chr15:43032504..43034009-chr15:43211732..43214005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction
ENSG00000246283	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10220713	1.00[EUR][1000 genomes]
rs10220718	1.00[EUR][1000 genomes]
rs10220726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220875	1.00[EUR][1000 genomes]
rs11070384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317628	1.00[EUR][1000 genomes]
rs13379871	1.00[EUR][1000 genomes]
rs13380157	1.00[EUR][1000 genomes]
rs13380212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380301	1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes]
rs16957138	1.00[EUR][1000 genomes]
rs16957164	1.00[EUR][1000 genomes]
rs16957185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957187	1.00[EUR][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16957292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054388	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306127	1.00[ASN][1000 genomes]
rs2306128	1.00[ASN][1000 genomes]
rs28535059	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34436896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35584827	1.00[EUR][1000 genomes]
rs56894749	1.00[EUR][1000 genomes]
rs57880396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59589598	1.00[AMR][1000 genomes]
rs60789298	1.00[EUR][1000 genomes]
rs60832391	1.00[EUR][1000 genomes]
rs60881935	1.00[EUR][1000 genomes]
rs61682243	1.00[EUR][1000 genomes]
rs7164041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165249	1.00[EUR][1000 genomes]
rs7174661	1.00[EUR][1000 genomes]
rs7175062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495345	1.00[ASN][1000 genomes]
rs8031111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032994	1.00[EUR][1000 genomes]
rs9806161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43207600-43212000	Weak transcription	Ovary	ovary
2	chr15:43208200-43212000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:43210400-43212400	Flanking Active TSS	Dnd41	blood
4	chr15:43210600-43212200	Flanking Active TSS	NHEK	skin
5	chr15:43210600-43212400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:43210600-43212400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:43210600-43213400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr15:43210800-43212200	Weak transcription	Lung	lung
9	chr15:43210800-43213400	Active TSS	HMEC	breast
10	chr15:43211200-43212000	Flanking Active TSS	A549	lung
11	chr15:43211400-43212000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:43211400-43212000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr15:43211400-43212000	Enhancers	Colon Smooth Muscle	Colon
14	chr15:43211400-43212000	Flanking Active TSS	Fetal Heart	heart
15	chr15:43211400-43212200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr15:43211400-43212200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:43211400-43212200	Flanking Active TSS	GM12878-XiMat	blood
18	chr15:43211400-43212200	Flanking Active TSS	K562	blood
19	chr15:43211400-43212200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr15:43211400-43212400	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr15:43211400-43212400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr15:43211400-43212400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:43211400-43212400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:43211400-43212400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr15:43211400-43212400	Flanking Active TSS	HUVEC	blood vessel
26	chr15:43211400-43213000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:43211400-43213400	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr15:43211400-43213400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:43211400-43213400	Active TSS	NHLF	lung
30	chr15:43211400-43213600	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr15:43211400-43213800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:43211400-43214000	Active TSS	NHDF-Ad	bronchial
33	chr15:43211600-43212000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:43211600-43212000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr15:43211600-43212000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:43211600-43212000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr15:43211600-43212000	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:43211600-43212000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:43211600-43212000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:43211600-43212000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr15:43211600-43212000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:43211600-43212000	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr15:43211600-43212000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:43211600-43212000	Flanking Active TSS	Fetal Brain Male	brain
45	chr15:43211600-43212000	Flanking Active TSS	Fetal Brain Female	brain
46	chr15:43211600-43212000	Active TSS	Fetal Thymus	thymus
47	chr15:43211600-43212000	Enhancers	Pancreas	Pancrea
48	chr15:43211600-43212000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr15:43211600-43212000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr15:43211600-43212000	Enhancers	Small Intestine	intestine

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