Variant report

Variant	rs16957292
Chromosome Location	chr15:43274568-43274569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43274336..43276326-chr15:43276849..43278909,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10048057	0.89[AFR][1000 genomes]
rs10220713	1.00[EUR][1000 genomes]
rs10220718	1.00[EUR][1000 genomes]
rs10220726	1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220875	1.00[EUR][1000 genomes]
rs11070384	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324094	1.00[MKK][hapmap]
rs1317628	1.00[EUR][1000 genomes]
rs13379871	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[EUR][1000 genomes]
rs13380157	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[EUR][1000 genomes]
rs13380212	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380301	1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes]
rs16957138	1.00[EUR][1000 genomes]
rs16957164	1.00[MKK][hapmap];1.00[EUR][1000 genomes]
rs16957185	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957187	1.00[EUR][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs2054388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306127	1.00[ASN][1000 genomes]
rs2306128	1.00[ASN][1000 genomes]
rs28535059	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34436896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56894749	1.00[EUR][1000 genomes]
rs57880396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59276064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60789298	1.00[EUR][1000 genomes]
rs60832391	1.00[EUR][1000 genomes]
rs60881935	1.00[EUR][1000 genomes]
rs61682243	1.00[EUR][1000 genomes]
rs7164041	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165249	1.00[EUR][1000 genomes]
rs7174661	1.00[EUR][1000 genomes]
rs7175062	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495345	1.00[ASN][1000 genomes]
rs8030850	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs8031111	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032994	1.00[EUR][1000 genomes]
rs8040769	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs9806161	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806313	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972314	1.00[CHD][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv3421859	chr15:43249285-43280570	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
15	nsv904137	chr15:43268970-43392075	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv904138	chr15:43268970-43414673	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
18	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:43244000-43276400	Weak transcription	Psoas Muscle	Psoas
3	chr15:43248000-43320600	Weak transcription	Stomach Mucosa	stomach
4	chr15:43249600-43283200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:43252400-43298400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:43252800-43295800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:43255200-43278800	Weak transcription	Esophagus	oesophagus
8	chr15:43258800-43277600	Weak transcription	Colonic Mucosa	Colon
9	chr15:43261000-43277000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:43262400-43276800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:43262600-43292000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:43263400-43284000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:43264000-43283000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr15:43265400-43275400	Strong transcription	NH-A	brain
15	chr15:43265800-43275600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:43265800-43277200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:43265800-43278800	Weak transcription	NHLF	lung
18	chr15:43265800-43283600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:43265800-43296800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:43266000-43292200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:43266400-43294800	Weak transcription	Pancreas	Pancrea
22	chr15:43266800-43286800	Weak transcription	A549	lung
23	chr15:43267000-43276400	Weak transcription	Brain Substantia Nigra	brain
24	chr15:43267200-43278600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:43267200-43278800	Weak transcription	Gastric	stomach
26	chr15:43267200-43278800	Weak transcription	Spleen	Spleen
27	chr15:43267200-43323000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:43268200-43278800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:43268800-43274800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:43269000-43274600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:43269000-43277600	Weak transcription	Right Ventricle	heart
32	chr15:43269000-43296800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:43269000-43298400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:43269000-43312800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:43269200-43275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:43269200-43397200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:43269400-43278800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:43269600-43275200	Weak transcription	Ovary	ovary
39	chr15:43269600-43276000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:43269600-43278400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:43269600-43278600	Weak transcription	Brain Germinal Matrix	brain
42	chr15:43269600-43279000	Weak transcription	Aorta	Aorta
43	chr15:43269600-43300200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:43269800-43274600	Weak transcription	Brain Angular Gyrus	brain
45	chr15:43269800-43276000	Weak transcription	HepG2	liver
46	chr15:43269800-43276400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:43269800-43279000	Weak transcription	Lung	lung
48	chr15:43269800-43314800	Weak transcription	Fetal Brain Male	brain
49	chr15:43269800-43335200	Weak transcription	Small Intestine	intestine
50	chr15:43270400-43278200	Weak transcription	Fetal Heart	heart

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