Variant report

Variant	rs60881935
Chromosome Location	chr15:43131255-43131256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10220713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10220718	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10220726	1.00[EUR][1000 genomes]
rs10220875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10438302	1.00[ASN][1000 genomes]
rs11070381	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11070384	1.00[EUR][1000 genomes]
rs11504666	1.00[EUR][1000 genomes]
rs1317628	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13379871	1.00[EUR][1000 genomes]
rs13380157	1.00[EUR][1000 genomes]
rs13380212	1.00[EUR][1000 genomes]
rs13380301	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16956991	1.00[EUR][1000 genomes]
rs16957002	1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16957138	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16957164	1.00[EUR][1000 genomes]
rs16957178	0.88[ASN][1000 genomes]
rs16957185	1.00[EUR][1000 genomes]
rs16957187	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16957224	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16957292	1.00[EUR][1000 genomes]
rs16973395	1.00[EUR][1000 genomes]
rs1877137	1.00[EUR][1000 genomes]
rs1877138	1.00[EUR][1000 genomes]
rs2054388	1.00[EUR][1000 genomes]
rs28535059	1.00[EUR][1000 genomes]
rs34348991	0.84[ASN][1000 genomes]
rs34436896	1.00[EUR][1000 genomes]
rs35584827	1.00[EUR][1000 genomes]
rs56894749	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57880396	1.00[EUR][1000 genomes]
rs58506324	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58754188	1.00[ASN][1000 genomes]
rs58756153	1.00[ASN][1000 genomes]
rs59276064	1.00[EUR][1000 genomes]
rs60752181	0.85[ASN][1000 genomes]
rs60789298	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60807675	0.84[ASN][1000 genomes]
rs60832391	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61682243	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7164041	1.00[EUR][1000 genomes]
rs7165249	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7174661	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7175062	1.00[EUR][1000 genomes]
rs7177501	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8031111	1.00[EUR][1000 genomes]
rs8032994	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8039438	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806161	1.00[EUR][1000 genomes]
rs9806313	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:43063400-43136200	Weak transcription	Psoas Muscle	Psoas
3	chr15:43064800-43150800	Weak transcription	HSMM	muscle
4	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:43075400-43135800	Weak transcription	HSMMtube	muscle
7	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:43075800-43134800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:43075800-43159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:43089800-43165200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:43091800-43135400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:43094400-43163800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:43094600-43150800	Weak transcription	Aorta	Aorta
14	chr15:43095000-43165000	Weak transcription	Spleen	Spleen
15	chr15:43095600-43136000	Weak transcription	Fetal Brain Female	brain
16	chr15:43095800-43139000	Weak transcription	Esophagus	oesophagus
17	chr15:43096000-43133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:43096000-43135600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:43096000-43136000	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:43096200-43136000	Weak transcription	Lung	lung
21	chr15:43103000-43133400	Weak transcription	Brain Substantia Nigra	brain
22	chr15:43103000-43134600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:43103000-43136000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:43103000-43165400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:43103200-43138400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:43103400-43133800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:43103400-43136000	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:43103400-43173200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:43106000-43136000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:43106200-43142000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:43107400-43134400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:43108200-43136200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr15:43110800-43136000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:43112600-43138000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:43114800-43172000	Weak transcription	Pancreas	Pancrea
36	chr15:43118200-43139200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:43118400-43144400	Weak transcription	Gastric	stomach
38	chr15:43119200-43136000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:43119600-43136200	Weak transcription	Fetal Lung	lung
40	chr15:43119600-43168200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:43119600-43172600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:43119800-43163200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr15:43119800-43170200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:43120000-43136000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:43120000-43142000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr15:43120000-43151000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:43120200-43135800	Weak transcription	Fetal Intestine Large	intestine
48	chr15:43120400-43131400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:43120600-43131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:43120600-43141800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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