Variant report

Variant	rs35584827
Chromosome Location	chr15:42975259-42975260
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42972332..42975595-chr15:42981286..42984253,3	K562	blood:
2	chr15:42964822..42967725-chr15:42973994..42976246,3	K562	blood:
3	chr15:42964822..42967725-chr15:42973994..42976246,2	K562	blood:
4	chr15:42972306..42975288-chr15:42982753..42985416,2	K562	blood:

Variant related genes	Relation type
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10220713	1.00[EUR][1000 genomes]
rs10220718	1.00[EUR][1000 genomes]
rs10220726	1.00[EUR][1000 genomes]
rs10220875	1.00[EUR][1000 genomes]
rs11504666	1.00[EUR][1000 genomes]
rs1317628	1.00[EUR][1000 genomes]
rs13379871	1.00[EUR][1000 genomes]
rs13380157	1.00[EUR][1000 genomes]
rs13380301	1.00[EUR][1000 genomes]
rs16956991	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957002	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16957125	1.00[EUR][1000 genomes]
rs16957138	1.00[EUR][1000 genomes]
rs16957164	1.00[EUR][1000 genomes]
rs16957185	1.00[EUR][1000 genomes]
rs16957187	1.00[EUR][1000 genomes]
rs16957201	1.00[EUR][1000 genomes]
rs16973395	1.00[EUR][1000 genomes]
rs1877137	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877138	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28402077	1.00[EUR][1000 genomes]
rs56894749	1.00[EUR][1000 genomes]
rs57880396	1.00[EUR][1000 genomes]
rs59276064	1.00[EUR][1000 genomes]
rs60789298	1.00[EUR][1000 genomes]
rs60832391	1.00[EUR][1000 genomes]
rs60881935	1.00[EUR][1000 genomes]
rs61682243	1.00[EUR][1000 genomes]
rs7164041	1.00[EUR][1000 genomes]
rs7165249	1.00[EUR][1000 genomes]
rs7172064	1.00[EUR][1000 genomes]
rs7174661	1.00[EUR][1000 genomes]
rs8031111	1.00[EUR][1000 genomes]
rs8032994	1.00[EUR][1000 genomes]
rs9806161	1.00[EUR][1000 genomes]
rs9806313	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv517553	chr15:42970899-43023482	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
2	chr15:42949800-42999200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:42950400-42990200	Strong transcription	Fetal Stomach	stomach
4	chr15:42951000-42995000	Strong transcription	Fetal Muscle Trunk	muscle
5	chr15:42952600-42979000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:42952600-42995600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:42952800-42996000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:42953400-42992200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:42954400-42976200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:42954600-42986200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:42954800-42983000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:42955000-42990200	Strong transcription	Fetal Muscle Leg	muscle
13	chr15:42956000-42976400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:42957000-42976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:42960000-42981800	Strong transcription	Primary T cells from cord blood	blood
16	chr15:42961000-42977600	Weak transcription	Small Intestine	intestine
17	chr15:42961200-42989200	Strong transcription	Ovary	ovary
18	chr15:42961400-42990800	Strong transcription	Colon Smooth Muscle	Colon
19	chr15:42961600-42989200	Weak transcription	Pancreas	Pancrea
20	chr15:42963800-42976200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:42964200-42982400	Weak transcription	A549	lung
22	chr15:42964600-42979200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:42965000-42982200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:42966000-42992800	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:42966400-42978400	Weak transcription	Dnd41	blood
26	chr15:42966400-42988400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:42966400-42988600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:42966600-42979400	Strong transcription	Spleen	Spleen
29	chr15:42966600-42979800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:42966600-42982400	Strong transcription	Fetal Brain Female	brain
31	chr15:42966600-42982800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr15:42966600-42988000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:42966600-42989200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:42966800-42987600	Strong transcription	Aorta	Aorta
35	chr15:42967200-42977600	Strong transcription	Primary B cells from cord blood	blood
36	chr15:42968400-42992200	Weak transcription	Fetal Brain Male	brain
37	chr15:42968600-42976400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:42968600-42996800	Weak transcription	Liver	Liver
39	chr15:42968600-42999000	Weak transcription	HUVEC	blood vessel
40	chr15:42968800-42978000	Weak transcription	NH-A	brain
41	chr15:42969400-42988400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:42969800-42976600	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:42970200-42983400	Weak transcription	K562	blood
44	chr15:42970400-42979800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:42970600-42990200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:42970800-42986200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr15:42971400-42992600	Strong transcription	Adipose Nuclei	Adipose
48	chr15:42971600-42992400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:42971800-42976200	Weak transcription	GM12878-XiMat	blood
50	chr15:42972400-42976200	Weak transcription	Hela-S3	cervix

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