Variant report

Variant	rs7178396
Chromosome Location	chr15:42707261-42707262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42698233..42703312-chr15:42703479..42708352,6	K562	blood:
2	chr15:42563602..42565878-chr15:42706468..42708668,2	MCF-7	breast:
3	chr15:42699538..42703312-chr15:42704209..42708483,5	K562	blood:

Variant related genes	Relation type
ENSG00000103978	Chromatin interaction
ENSG00000092529	Chromatin interaction
ENSG00000214013	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1062016	1.00[ASN][1000 genomes]
rs11070367	1.00[EUR][1000 genomes]
rs11070371	1.00[EUR][1000 genomes]
rs1142536	1.00[ASN][1000 genomes]
rs11633276	1.00[EUR][1000 genomes]
rs11856807	1.00[EUR][1000 genomes]
rs12102204	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12593511	1.00[EUR][1000 genomes]
rs12902924	1.00[EUR][1000 genomes]
rs12911561	1.00[EUR][1000 genomes]
rs1659214	1.00[EUR][1000 genomes]
rs1659216	1.00[EUR][1000 genomes]
rs1659220	1.00[EUR][1000 genomes]
rs1659223	1.00[EUR][1000 genomes]
rs1659225	1.00[EUR][1000 genomes]
rs1871156	1.00[EUR][1000 genomes]
rs2244773	1.00[EUR][1000 genomes]
rs2289293	1.00[EUR][1000 genomes]
rs2289297	1.00[EUR][1000 genomes]
rs2412675	1.00[EUR][1000 genomes]
rs2412676	1.00[EUR][1000 genomes]
rs2412678	1.00[EUR][1000 genomes]
rs2412683	1.00[EUR][1000 genomes]
rs2412684	1.00[EUR][1000 genomes]
rs2412689	1.00[EUR][1000 genomes]
rs2412694	1.00[EUR][1000 genomes]
rs2412695	1.00[EUR][1000 genomes]
rs2412716	1.00[EUR][1000 genomes]
rs2578651	1.00[EUR][1000 genomes]
rs2595935	1.00[EUR][1000 genomes]
rs2620372	1.00[EUR][1000 genomes]
rs28364379	1.00[EUR][1000 genomes]
rs28364398	1.00[EUR][1000 genomes]
rs28364400	1.00[EUR][1000 genomes]
rs28364462	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28364472	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28364473	0.87[ASN][1000 genomes]
rs28364491	1.00[EUR][1000 genomes]
rs28364495	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28364498	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28364500	1.00[EUR][1000 genomes]
rs28364503	1.00[EUR][1000 genomes]
rs28364504	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28364507	1.00[EUR][1000 genomes]
rs28364509	1.00[EUR][1000 genomes]
rs28364511	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28364519	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28364522	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28364523	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28364524	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28364526	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28364540	1.00[EUR][1000 genomes]
rs28364541	1.00[EUR][1000 genomes]
rs28364544	1.00[EUR][1000 genomes]
rs28364557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28364559	1.00[ASN][1000 genomes]
rs28489155	1.00[EUR][1000 genomes]
rs28602748	0.95[ASN][1000 genomes]
rs28621687	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28726153	0.95[ASN][1000 genomes]
rs28745879	1.00[EUR][1000 genomes]
rs2899044	1.00[EUR][1000 genomes]
rs2899058	1.00[EUR][1000 genomes]
rs3743002	1.00[EUR][1000 genomes]
rs3803342	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4556762	1.00[EUR][1000 genomes]
rs4923936	1.00[EUR][1000 genomes]
rs4923937	1.00[EUR][1000 genomes]
rs4923939	1.00[EUR][1000 genomes]
rs4924640	1.00[EUR][1000 genomes]
rs4924641	1.00[EUR][1000 genomes]
rs4924642	1.00[EUR][1000 genomes]
rs4924643	1.00[EUR][1000 genomes]
rs4924649	1.00[EUR][1000 genomes]
rs4924657	1.00[EUR][1000 genomes]
rs4924670	1.00[EUR][1000 genomes]
rs5028173	1.00[EUR][1000 genomes]
rs62022303	0.95[ASN][1000 genomes]
rs62022305	0.95[ASN][1000 genomes]
rs6493024	1.00[EUR][1000 genomes]
rs6493026	1.00[EUR][1000 genomes]
rs6493031	1.00[EUR][1000 genomes]
rs6493034	1.00[EUR][1000 genomes]
rs6493038	1.00[EUR][1000 genomes]
rs6493041	1.00[EUR][1000 genomes]
rs6493046	0.95[ASN][1000 genomes]
rs6493047	1.00[EUR][1000 genomes]
rs6493051	1.00[EUR][1000 genomes]
rs67384392	1.00[EUR][1000 genomes]
rs7161982	1.00[EUR][1000 genomes]
rs7164196	1.00[EUR][1000 genomes]
rs7164484	1.00[EUR][1000 genomes]
rs7168121	0.95[ASN][1000 genomes]
rs7169553	1.00[EUR][1000 genomes]
rs7170943	1.00[EUR][1000 genomes]
rs7177193	1.00[EUR][1000 genomes]
rs7177463	1.00[EUR][1000 genomes]
rs7177521	1.00[EUR][1000 genomes]
rs7181940	1.00[EUR][1000 genomes]
rs7182777	1.00[EUR][1000 genomes]
rs7183399	1.00[EUR][1000 genomes]
rs7183843	1.00[EUR][1000 genomes]
rs8023568	1.00[EUR][1000 genomes]
rs8023678	1.00[EUR][1000 genomes]
rs8031541	1.00[ASN][1000 genomes]
rs8036149	1.00[EUR][1000 genomes]
rs8036163	1.00[EUR][1000 genomes]
rs8040720	1.00[EUR][1000 genomes]
rs8042603	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043033	1.00[EUR][1000 genomes]
rs936603	1.00[EUR][1000 genomes]
rs9920851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42689000-42712400	Weak transcription	Fetal Brain Male	brain
2	chr15:42692600-42708400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:42694600-42750600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:42694800-42708400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:42695000-42716000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:42697000-42708400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:42697200-42707800	Weak transcription	K562	blood
8	chr15:42698400-42708400	Weak transcription	Fetal Kidney	kidney
9	chr15:42698600-42738400	Strong transcription	Fetal Muscle Leg	muscle
10	chr15:42699200-42741600	Strong transcription	Fetal Muscle Trunk	muscle
11	chr15:42700000-42732400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:42700200-42713600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:42700600-42710200	Strong transcription	Brain Anterior Caudate	brain
14	chr15:42700800-42708200	Weak transcription	Stomach Mucosa	stomach
15	chr15:42700800-42732000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:42700800-42747200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:42701000-42719200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:42701000-42738800	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:42701400-42710200	Strong transcription	Brain Cingulate Gyrus	brain
21	chr15:42701400-42710200	Strong transcription	Brain Hippocampus Middle	brain
22	chr15:42701400-42710200	Strong transcription	Brain Substantia Nigra	brain
23	chr15:42701400-42732600	Strong transcription	Adipose Nuclei	Adipose
24	chr15:42701600-42744200	Strong transcription	Stomach Smooth Muscle	stomach
25	chr15:42701800-42732400	Strong transcription	Fetal Intestine Large	intestine
26	chr15:42702000-42711400	Strong transcription	Primary T cells from cord blood	blood
27	chr15:42702200-42719200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:42702200-42750200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr15:42702400-42710200	Strong transcription	Primary B cells from cord blood	blood
30	chr15:42702400-42732600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:42702400-42744200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:42702400-42744200	Strong transcription	Liver	Liver
33	chr15:42702600-42707400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr15:42702600-42708200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:42702600-42708400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:42702600-42709800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:42702600-42713000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:42702600-42719400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:42702600-42724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:42702600-42732400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:42702600-42738800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:42702600-42744400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:42702800-42708400	Weak transcription	Dnd41	blood
44	chr15:42702800-42711200	Strong transcription	Colon Smooth Muscle	Colon
45	chr15:42702800-42719200	Strong transcription	HSMMtube	muscle
46	chr15:42702800-42732000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:42702800-42744400	Strong transcription	Duodenum Mucosa	Duodenum
48	chr15:42703000-42707400	Strong transcription	Colonic Mucosa	Colon
49	chr15:42703000-42708600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:42703000-42710200	Strong transcription	Primary hematopoietic stem cells	blood

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