Variant report

Variant	rs2899058
Chromosome Location	chr15:42818026-42818027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42817015..42818748-chr15:42821725..42824500,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10775127	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12102204	1.00[EUR][1000 genomes]
rs12593511	1.00[EUR][1000 genomes]
rs12911561	1.00[EUR][1000 genomes]
rs1659214	1.00[EUR][1000 genomes]
rs1659216	1.00[EUR][1000 genomes]
rs1659220	1.00[EUR][1000 genomes]
rs1659223	1.00[EUR][1000 genomes]
rs1659225	1.00[EUR][1000 genomes]
rs1871156	1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2244773	1.00[EUR][1000 genomes]
rs2289293	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2289297	1.00[EUR][1000 genomes]
rs2412716	1.00[EUR][1000 genomes]
rs2578651	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2595935	1.00[EUR][1000 genomes]
rs28364379	1.00[EUR][1000 genomes]
rs28364398	1.00[EUR][1000 genomes]
rs28364400	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364462	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364472	1.00[EUR][1000 genomes]
rs28364475	1.00[GIH][hapmap]
rs28364491	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364495	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364498	1.00[EUR][1000 genomes]
rs28364500	1.00[EUR][1000 genomes]
rs28364503	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364504	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364507	1.00[EUR][1000 genomes]
rs28364508	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs28364509	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364511	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364519	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364522	1.00[EUR][1000 genomes]
rs28364523	1.00[EUR][1000 genomes]
rs28364524	1.00[EUR][1000 genomes]
rs28364526	1.00[EUR][1000 genomes]
rs28364540	1.00[EUR][1000 genomes]
rs28364541	1.00[EUR][1000 genomes]
rs28364544	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364557	1.00[EUR][1000 genomes]
rs28364559	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs28489155	1.00[EUR][1000 genomes]
rs28621687	1.00[EUR][1000 genomes]
rs28745879	1.00[EUR][1000 genomes]
rs3743002	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3803342	1.00[EUR][1000 genomes]
rs6493047	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6493051	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7164196	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7168121	0.88[GIH][hapmap]
rs7177521	1.00[EUR][1000 genomes]
rs7178396	1.00[EUR][1000 genomes]
rs7181940	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7183399	1.00[EUR][1000 genomes]
rs8036149	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8036163	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8036993	1.00[EUR][1000 genomes]
rs8042603	1.00[EUR][1000 genomes]
rs8043033	1.00[EUR][1000 genomes]
rs9920851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	esv2761870	chr15:42815733-42821267	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42790800-42821400	Weak transcription	Right Ventricle	heart
2	chr15:42793000-42835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:42793800-42837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:42797400-42839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:42797600-42822200	Weak transcription	Small Intestine	intestine
6	chr15:42797600-42839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:42799200-42839400	Weak transcription	Stomach Mucosa	stomach
8	chr15:42802400-42839200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:42803200-42837200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:42803600-42839400	Weak transcription	A549	lung
11	chr15:42804000-42826800	Strong transcription	HUVEC	blood vessel
12	chr15:42804600-42836400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:42804800-42825400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:42804800-42828800	Strong transcription	Placenta	Placenta
15	chr15:42804800-42836400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr15:42804800-42836400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr15:42805000-42818400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:42805000-42818800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:42805000-42818800	Strong transcription	NH-A	brain
20	chr15:42805200-42825800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:42805400-42836800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:42805600-42818400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:42805600-42818800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:42806200-42836400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:42806200-42839000	Weak transcription	Fetal Brain Male	brain
26	chr15:42807600-42821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:42808200-42820400	Weak transcription	Brain Angular Gyrus	brain
28	chr15:42808200-42824800	Weak transcription	Hela-S3	cervix
29	chr15:42808400-42820000	Weak transcription	K562	blood
30	chr15:42808400-42821400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:42808400-42822000	Weak transcription	HMEC	breast
32	chr15:42808400-42839000	Weak transcription	Fetal Heart	heart
33	chr15:42808800-42821000	Weak transcription	Aorta	Aorta
34	chr15:42808800-42836000	Weak transcription	Esophagus	oesophagus
35	chr15:42810200-42831000	Weak transcription	Gastric	stomach
36	chr15:42810200-42840200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:42810400-42820400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:42810400-42821400	Weak transcription	Psoas Muscle	Psoas
39	chr15:42810400-42821800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:42810600-42821400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:42810600-42822000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:42810600-42822400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:42810800-42823400	Weak transcription	Ovary	ovary
44	chr15:42811000-42821400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr15:42811000-42821800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:42811000-42837600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:42811200-42822000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:42811200-42828600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:42811200-42831200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:42811400-42821400	Weak transcription	Fetal Lung	lung

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