Variant report

Variant	rs7183399
Chromosome Location	chr15:42670506-42670507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10518757	0.82[ASN][1000 genomes]
rs11070367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11070368	0.82[ASN][1000 genomes]
rs11070369	0.82[ASN][1000 genomes]
rs11070371	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11631711	0.82[ASN][1000 genomes]
rs11631756	0.82[ASN][1000 genomes]
rs11631823	0.82[ASN][1000 genomes]
rs11631922	0.82[ASN][1000 genomes]
rs11633276	1.00[EUR][1000 genomes]
rs11635876	0.82[ASN][1000 genomes]
rs11637010	0.82[ASN][1000 genomes]
rs11637045	0.82[ASN][1000 genomes]
rs11856797	0.82[ASN][1000 genomes]
rs11856807	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11858453	0.82[ASN][1000 genomes]
rs12102204	1.00[EUR][1000 genomes]
rs12324205	0.88[ASN][1000 genomes]
rs12437815	0.82[ASN][1000 genomes]
rs12441027	0.82[ASN][1000 genomes]
rs12592200	0.82[ASN][1000 genomes]
rs12593511	1.00[EUR][1000 genomes]
rs12902924	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12907489	0.82[ASN][1000 genomes]
rs12911561	1.00[EUR][1000 genomes]
rs12913755	0.82[ASN][1000 genomes]
rs12916523	0.82[ASN][1000 genomes]
rs1659214	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1659216	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1659220	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1659223	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1659224	0.82[ASN][1000 genomes]
rs1659225	1.00[EUR][1000 genomes]
rs1659226	0.82[ASN][1000 genomes]
rs1678997	0.82[ASN][1000 genomes]
rs1678998	0.82[ASN][1000 genomes]
rs1678999	0.82[ASN][1000 genomes]
rs1871156	1.00[EUR][1000 genomes]
rs2244773	1.00[EUR][1000 genomes]
rs2289293	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2289297	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412677	0.82[ASN][1000 genomes]
rs2412678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412681	0.82[ASN][1000 genomes]
rs2412683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412686	0.82[ASN][1000 genomes]
rs2412689	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412690	0.82[ASN][1000 genomes]
rs2412691	0.82[ASN][1000 genomes]
rs2412694	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412695	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412697	0.82[ASN][1000 genomes]
rs2412698	0.82[ASN][1000 genomes]
rs2412699	0.82[ASN][1000 genomes]
rs2412702	0.82[ASN][1000 genomes]
rs2412716	1.00[EUR][1000 genomes]
rs2578651	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2595935	1.00[EUR][1000 genomes]
rs2620372	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2620374	0.82[ASN][1000 genomes]
rs2620375	0.82[ASN][1000 genomes]
rs28364379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28364398	1.00[EUR][1000 genomes]
rs28364400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28364462	1.00[EUR][1000 genomes]
rs28364472	1.00[EUR][1000 genomes]
rs28364475	0.94[ASN][1000 genomes]
rs28364491	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28364495	1.00[EUR][1000 genomes]
rs28364498	1.00[EUR][1000 genomes]
rs28364500	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28364503	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28364504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364507	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28364509	1.00[EUR][1000 genomes]
rs28364511	1.00[EUR][1000 genomes]
rs28364519	1.00[EUR][1000 genomes]
rs28364522	1.00[EUR][1000 genomes]
rs28364523	1.00[EUR][1000 genomes]
rs28364524	1.00[EUR][1000 genomes]
rs28364526	1.00[EUR][1000 genomes]
rs28364536	0.88[ASN][1000 genomes]
rs28364540	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28364541	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28364544	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28364557	1.00[EUR][1000 genomes]
rs28489155	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28621687	1.00[EUR][1000 genomes]
rs28745879	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2899044	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2899058	1.00[EUR][1000 genomes]
rs2918458	0.82[ASN][1000 genomes]
rs3098422	0.82[ASN][1000 genomes]
rs3101895	0.82[ASN][1000 genomes]
rs3736095	0.82[ASN][1000 genomes]
rs3736096	0.82[ASN][1000 genomes]
rs3736097	0.82[ASN][1000 genomes]
rs3743002	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3803342	1.00[EUR][1000 genomes]
rs4244589	0.82[ASN][1000 genomes]
rs4268723	0.82[ASN][1000 genomes]
rs4480780	0.82[ASN][1000 genomes]
rs4556762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4583209	0.82[ASN][1000 genomes]
rs4595775	0.82[ASN][1000 genomes]
rs4617834	0.82[ASN][1000 genomes]
rs4923936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4923937	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4923938	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4923939	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4923941	0.82[ASN][1000 genomes]
rs4923942	0.82[ASN][1000 genomes]
rs4923944	0.82[ASN][1000 genomes]
rs4924640	1.00[EUR][1000 genomes]
rs4924641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4924642	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4924643	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4924649	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4924650	0.82[ASN][1000 genomes]
rs4924651	0.82[ASN][1000 genomes]
rs4924652	0.82[ASN][1000 genomes]
rs4924655	0.82[ASN][1000 genomes]
rs4924656	0.82[ASN][1000 genomes]
rs4924657	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4924659	0.82[ASN][1000 genomes]
rs4924662	0.82[ASN][1000 genomes]
rs4924663	0.82[ASN][1000 genomes]
rs4924664	0.82[ASN][1000 genomes]
rs4924665	0.82[ASN][1000 genomes]
rs4924666	0.82[ASN][1000 genomes]
rs4924667	0.82[ASN][1000 genomes]
rs4924668	0.82[ASN][1000 genomes]
rs4924669	0.82[ASN][1000 genomes]
rs4924670	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4924671	0.82[ASN][1000 genomes]
rs5028173	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5028174	0.82[ASN][1000 genomes]
rs5029919	1.00[ASN][1000 genomes]
rs6493024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493026	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493028	0.82[ASN][1000 genomes]
rs6493029	0.82[ASN][1000 genomes]
rs6493031	1.00[EUR][1000 genomes]
rs6493034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493037	0.82[ASN][1000 genomes]
rs6493038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493039	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6493040	0.82[ASN][1000 genomes]
rs6493041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493047	1.00[EUR][1000 genomes]
rs6493051	1.00[EUR][1000 genomes]
rs655704	1.00[EUR][1000 genomes]
rs67384392	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7161982	1.00[EUR][1000 genomes]
rs7163345	0.82[ASN][1000 genomes]
rs7163941	0.82[ASN][1000 genomes]
rs7164196	1.00[EUR][1000 genomes]
rs7164484	1.00[EUR][1000 genomes]
rs7167306	0.82[ASN][1000 genomes]
rs7169279	0.82[ASN][1000 genomes]
rs7169553	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7170592	0.82[ASN][1000 genomes]
rs7170943	1.00[EUR][1000 genomes]
rs7171379	0.82[ASN][1000 genomes]
rs7171709	0.82[ASN][1000 genomes]
rs7173358	0.82[ASN][1000 genomes]
rs7176663	1.00[AMR][1000 genomes]
rs7176724	0.82[ASN][1000 genomes]
rs7177193	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7177463	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7177521	1.00[EUR][1000 genomes]
rs7178396	1.00[EUR][1000 genomes]
rs7181940	1.00[EUR][1000 genomes]
rs7182777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7183843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8023568	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8023678	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8023714	0.82[ASN][1000 genomes]
rs8024390	0.82[ASN][1000 genomes]
rs8030212	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs8036149	1.00[EUR][1000 genomes]
rs8036163	1.00[EUR][1000 genomes]
rs8037627	0.82[ASN][1000 genomes]
rs8040698	0.82[ASN][1000 genomes]
rs8040720	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8042603	1.00[EUR][1000 genomes]
rs8043033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs936603	1.00[EUR][1000 genomes]
rs9920851	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv932995	chr15:42640015-42704121	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42645600-42677800	Weak transcription	Spleen	Spleen
2	chr15:42646000-42678600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:42647800-42678200	Weak transcription	Ovary	ovary
4	chr15:42649800-42673200	Weak transcription	Thymus	Thymus
5	chr15:42652800-42684400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:42653200-42691600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:42654200-42677800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:42656000-42678800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:42656800-42693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:42656800-42697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:42657200-42678800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:42659600-42676800	Weak transcription	Lung	lung
13	chr15:42663000-42691400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:42663200-42678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:42663600-42674600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr15:42666600-42676800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:42666600-42676800	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:42666600-42676800	Weak transcription	Left Ventricle	heart
19	chr15:42666800-42676800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:42667600-42673000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:42668600-42673000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:42669800-42670800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr15:42670200-42676800	Weak transcription	Primary B cells from cord blood	blood
24	chr15:42670400-42672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:42670400-42676200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links