The 2.0 version of rSNPBase

Variant report

Variant rs1678997
Chromosome Location chr15:42613647-42613648
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42567200-42623600 Weak transcription Fetal Brain Male brain
2 chr15:42568400-42656000 Weak transcription Small Intestine intestine
3 chr15:42568600-42630800 Weak transcription Dnd41 blood
4 chr15:42573400-42635800 Weak transcription Gastric stomach
5 chr15:42576400-42620800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr15:42577800-42616200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr15:42585400-42623600 Weak transcription Colon Smooth Muscle Colon
8 chr15:42586200-42613800 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr15:42593800-42616000 Weak transcription Hela-S3 cervix
10 chr15:42596800-42625200 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr15:42597000-42614600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr15:42597800-42621200 Weak transcription Primary hematopoietic stem cells short term culture blood
13 chr15:42600000-42614000 Weak transcription Psoas Muscle Psoas
14 chr15:42600400-42626400 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr15:42600600-42627200 Weak transcription Fetal Brain Female brain
16 chr15:42601200-42636000 Weak transcription Brain Germinal Matrix brain
17 chr15:42603000-42615400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr15:42603000-42615400 Weak transcription Fetal Stomach stomach
19 chr15:42603200-42613800 Weak transcription Brain Substantia Nigra brain
20 chr15:42603200-42614000 Weak transcription Fetal Lung lung
21 chr15:42603200-42614800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr15:42603200-42618400 Weak transcription HSMM muscle
23 chr15:42603200-42627200 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr15:42603200-42636000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr15:42603400-42614000 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr15:42603400-42614000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr15:42603400-42614400 Weak transcription HMEC breast
28 chr15:42603400-42615000 Weak transcription Brain Inferior Temporal Lobe brain
29 chr15:42603400-42617600 Weak transcription Placenta Placenta
30 chr15:42603400-42618400 Weak transcription Brain Cingulate Gyrus brain
31 chr15:42603400-42619200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr15:42603400-42619200 Weak transcription Rectal Smooth Muscle rectum
33 chr15:42603400-42622400 Weak transcription Fetal Heart heart
34 chr15:42603400-42623200 Weak transcription Brain Angular Gyrus brain
35 chr15:42603400-42648600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr15:42603400-42648600 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr15:42603800-42614400 Weak transcription GM12878-XiMat blood
38 chr15:42603800-42614800 Weak transcription HSMMtube muscle
39 chr15:42604000-42613800 Weak transcription Fetal Muscle Trunk muscle
40 chr15:42604000-42614000 Weak transcription Colonic Mucosa Colon
41 chr15:42604000-42615200 Weak transcription Fetal Thymus thymus
42 chr15:42604000-42639400 Weak transcription Placenta Amnion Placenta Amnion
43 chr15:42604200-42617800 Weak transcription Brain Hippocampus Middle brain
44 chr15:42604400-42613800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr15:42604400-42614400 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr15:42604400-42618400 Weak transcription Brain Anterior Caudate brain
47 chr15:42604600-42613800 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr15:42604600-42616800 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr15:42604600-42651200 Weak transcription Fetal Kidney kidney
50 chr15:42604800-42614000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015