Variant report

Variant	rs4293347
Chromosome Location	chr15:42591340-42591341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10518757	0.86[AFR][1000 genomes]
rs11631711	0.86[AFR][1000 genomes]
rs11631756	0.89[AFR][1000 genomes]
rs11631922	0.89[AFR][1000 genomes]
rs11635876	0.89[AFR][1000 genomes]
rs11637010	0.89[AFR][1000 genomes]
rs11637045	0.89[AFR][1000 genomes]
rs11856797	0.89[AFR][1000 genomes]
rs12437815	0.89[AFR][1000 genomes]
rs12441027	0.89[AFR][1000 genomes]
rs12592200	0.89[AFR][1000 genomes]
rs12902924	0.94[AFR][1000 genomes]
rs12903494	0.88[AFR][1000 genomes]
rs12907489	0.89[AFR][1000 genomes]
rs12915387	0.82[AFR][1000 genomes]
rs1659224	0.89[AFR][1000 genomes]
rs1659226	0.89[AFR][1000 genomes]
rs1678997	0.89[AFR][1000 genomes]
rs1678998	0.89[AFR][1000 genomes]
rs1678999	0.89[AFR][1000 genomes]
rs2412686	0.87[AFR][1000 genomes]
rs2412690	0.88[AFR][1000 genomes]
rs2412691	0.88[AFR][1000 genomes]
rs2412694	0.94[AFR][1000 genomes]
rs2412695	0.94[AFR][1000 genomes]
rs2412696	0.89[AFR][1000 genomes]
rs2412697	0.89[AFR][1000 genomes]
rs2412698	0.89[AFR][1000 genomes]
rs2412699	0.89[AFR][1000 genomes]
rs2412700	0.89[AFR][1000 genomes]
rs2412701	0.89[AFR][1000 genomes]
rs2412702	0.89[AFR][1000 genomes]
rs2620374	0.89[AFR][1000 genomes]
rs2620375	0.88[AFR][1000 genomes]
rs2918458	0.87[AFR][1000 genomes]
rs3098422	0.89[AFR][1000 genomes]
rs3101895	0.89[AFR][1000 genomes]
rs3736095	0.89[AFR][1000 genomes]
rs3736096	0.89[AFR][1000 genomes]
rs3736097	0.89[AFR][1000 genomes]
rs4244589	0.89[AFR][1000 genomes]
rs4480780	0.87[AFR][1000 genomes]
rs4583209	0.89[AFR][1000 genomes]
rs4617834	0.89[AFR][1000 genomes]
rs4923941	0.91[AFR][1000 genomes]
rs4923942	0.91[AFR][1000 genomes]
rs4923944	0.89[AFR][1000 genomes]
rs4924649	0.94[AFR][1000 genomes]
rs4924650	0.89[AFR][1000 genomes]
rs4924651	0.91[AFR][1000 genomes]
rs4924652	0.91[AFR][1000 genomes]
rs4924655	0.91[AFR][1000 genomes]
rs4924656	0.91[AFR][1000 genomes]
rs4924659	0.89[AFR][1000 genomes]
rs4924662	0.89[AFR][1000 genomes]
rs4924663	0.89[AFR][1000 genomes]
rs4924664	0.89[AFR][1000 genomes]
rs4924665	0.89[AFR][1000 genomes]
rs4924666	0.89[AFR][1000 genomes]
rs4924667	0.89[AFR][1000 genomes]
rs4924668	0.89[AFR][1000 genomes]
rs4924669	0.89[AFR][1000 genomes]
rs4924671	0.89[AFR][1000 genomes]
rs5028173	0.94[AFR][1000 genomes]
rs5028174	0.89[AFR][1000 genomes]
rs57052341	0.91[AFR][1000 genomes]
rs6493037	0.89[AFR][1000 genomes]
rs6493040	0.91[AFR][1000 genomes]
rs7163345	0.88[AFR][1000 genomes]
rs7163941	0.91[AFR][1000 genomes]
rs7167306	0.89[AFR][1000 genomes]
rs7169279	0.91[AFR][1000 genomes]
rs7169553	0.86[AFR][1000 genomes]
rs7170592	0.91[AFR][1000 genomes]
rs7171379	0.91[AFR][1000 genomes]
rs7171709	0.91[AFR][1000 genomes]
rs7172709	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7173358	0.89[AFR][1000 genomes]
rs7176724	0.91[AFR][1000 genomes]
rs7177463	0.96[AFR][1000 genomes]
rs7178319	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8023714	0.89[AFR][1000 genomes]
rs8037100	0.87[AFR][1000 genomes]
rs8037627	0.88[AFR][1000 genomes]
rs8040698	0.91[AFR][1000 genomes]
rs8040720	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
2	chr15:42568400-42604600	Weak transcription	NH-A	brain
3	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
4	chr15:42568600-42593000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
6	chr15:42568600-42630800	Weak transcription	Dnd41	blood
7	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:42573400-42635800	Weak transcription	Gastric	stomach
9	chr15:42573600-42602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr15:42573800-42592000	Weak transcription	Fetal Brain Female	brain
11	chr15:42573800-42605600	Weak transcription	Pancreas	Pancrea
12	chr15:42576000-42592400	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:42576200-42591600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:42576200-42593000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:42576200-42602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:42576200-42605800	Weak transcription	Esophagus	oesophagus
17	chr15:42576400-42602000	Weak transcription	Colonic Mucosa	Colon
18	chr15:42576400-42620800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:42577800-42616200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:42578600-42592800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:42579000-42592400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:42579000-42592400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr15:42579200-42592400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:42579200-42593400	Weak transcription	Hela-S3	cervix
25	chr15:42581600-42601600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:42581800-42602600	Weak transcription	HMEC	breast
27	chr15:42582000-42601000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:42582000-42613400	Weak transcription	HUVEC	blood vessel
29	chr15:42583400-42598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:42584200-42599200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:42584400-42599000	Weak transcription	Aorta	Aorta
32	chr15:42585200-42593000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:42585200-42593200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:42585400-42601200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:42585400-42601400	Weak transcription	Right Ventricle	heart
36	chr15:42585400-42623600	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:42585600-42593000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:42585600-42594000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:42585600-42595200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:42585600-42598800	Weak transcription	Ovary	ovary
41	chr15:42585600-42599000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr15:42585600-42599600	Weak transcription	Psoas Muscle	Psoas
43	chr15:42585600-42602000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:42585600-42602600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:42585600-42604400	Weak transcription	Fetal Kidney	kidney
46	chr15:42585600-42607600	Weak transcription	NHLF	lung
47	chr15:42585800-42602600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:42586000-42595000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:42586200-42613800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr15:42586600-42599200	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links