The 2.0 version of rSNPBase

Variant report

Variant rs5028174
Chromosome Location chr15:42604887-42604888
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42567200-42623600 Weak transcription Fetal Brain Male brain
2 chr15:42568400-42656000 Weak transcription Small Intestine intestine
3 chr15:42568600-42630800 Weak transcription Dnd41 blood
4 chr15:42573400-42635800 Weak transcription Gastric stomach
5 chr15:42573800-42605600 Weak transcription Pancreas Pancrea
6 chr15:42576200-42605800 Weak transcription Esophagus oesophagus
7 chr15:42576400-42620800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr15:42577800-42616200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr15:42582000-42613400 Weak transcription HUVEC blood vessel
10 chr15:42585400-42623600 Weak transcription Colon Smooth Muscle Colon
11 chr15:42585600-42607600 Weak transcription NHLF lung
12 chr15:42586200-42613800 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr15:42593800-42616000 Weak transcription Hela-S3 cervix
14 chr15:42596800-42609800 Weak transcription H1 Cell Line embryonic stem cell
15 chr15:42596800-42625200 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr15:42597000-42614600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr15:42597800-42621200 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr15:42598600-42606000 Strong transcription Liver Liver
19 chr15:42598600-42606600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr15:42598600-42606600 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr15:42598600-42606800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr15:42598600-42607000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr15:42598600-42607600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr15:42598600-42607800 Strong transcription Primary monocytes fromperipheralblood blood
25 chr15:42598600-42608200 Strong transcription Primary B cells from peripheral blood blood
26 chr15:42598600-42610600 Strong transcription Monocytes-CD14+_RO01746 blood
27 chr15:42598800-42605000 Strong transcription Duodenum Smooth Muscle Duodenum
28 chr15:42598800-42605200 Strong transcription Adipose Nuclei Adipose
29 chr15:42598800-42605800 Strong transcription Skeletal Muscle Female skeletal muscle
30 chr15:42598800-42606600 Strong transcription Ovary ovary
31 chr15:42599000-42606000 Strong transcription Duodenum Mucosa Duodenum
32 chr15:42599000-42606200 Strong transcription Lung lung
33 chr15:42599000-42606200 Strong transcription Rectal Mucosa Donor 29 rectum
34 chr15:42599000-42606600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr15:42599000-42606600 Strong transcription Left Ventricle heart
36 chr15:42599000-42607000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
37 chr15:42599000-42607200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr15:42599200-42605000 Strong transcription Sigmoid Colon Sigmoid Colon
39 chr15:42599800-42605600 Strong transcription Fetal Intestine Large intestine
40 chr15:42599800-42606800 Strong transcription Primary T cells from cord blood blood
41 chr15:42600000-42614000 Weak transcription Psoas Muscle Psoas
42 chr15:42600400-42626400 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr15:42600600-42613600 Weak transcription Muscle Satellite Cultured Cells --
44 chr15:42600600-42627200 Weak transcription Fetal Brain Female brain
45 chr15:42600800-42612800 Weak transcription Thymus Thymus
46 chr15:42601200-42606600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr15:42601200-42636000 Weak transcription Brain Germinal Matrix brain
48 chr15:42601400-42606800 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr15:42602200-42605600 Weak transcription Fetal Intestine Small intestine
50 chr15:42602200-42606000 Strong transcription Primary hematopoietic stem cells blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015