The 2.0 version of rSNPBase

Variant report

Variant rs4923942
Chromosome Location chr15:42586207-42586208
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42567200-42623600 Weak transcription Fetal Brain Male brain
2 chr15:42568400-42604600 Weak transcription NH-A brain
3 chr15:42568400-42656000 Weak transcription Small Intestine intestine
4 chr15:42568600-42587000 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr15:42568600-42587000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr15:42568600-42593000 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr15:42568600-42602600 Weak transcription Fetal Heart heart
8 chr15:42568600-42630800 Weak transcription Dnd41 blood
9 chr15:42569000-42591000 Strong transcription Primary B cells from peripheral blood blood
10 chr15:42569400-42602800 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr15:42570200-42586600 Strong transcription Adipose Nuclei Adipose
12 chr15:42570600-42586600 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr15:42573400-42635800 Weak transcription Gastric stomach
14 chr15:42573600-42587200 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr15:42573600-42602600 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr15:42573800-42592000 Weak transcription Fetal Brain Female brain
17 chr15:42573800-42605600 Weak transcription Pancreas Pancrea
18 chr15:42576000-42592400 Strong transcription Skeletal Muscle Female skeletal muscle
19 chr15:42576200-42591600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr15:42576200-42593000 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr15:42576200-42602800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr15:42576200-42605800 Weak transcription Esophagus oesophagus
23 chr15:42576400-42602000 Weak transcription Colonic Mucosa Colon
24 chr15:42576400-42620800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr15:42577000-42590000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr15:42577800-42616200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr15:42578600-42592800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr15:42578800-42586600 Strong transcription Primary T cells fromperipheralblood blood
29 chr15:42578800-42587200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
30 chr15:42579000-42586800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr15:42579000-42592400 Strong transcription Primary monocytes fromperipheralblood blood
32 chr15:42579000-42592400 Strong transcription Monocytes-CD14+_RO01746 blood
33 chr15:42579200-42588200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr15:42579200-42589800 Weak transcription Fetal Lung lung
35 chr15:42579200-42592400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr15:42579200-42593400 Weak transcription Hela-S3 cervix
37 chr15:42579400-42586800 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr15:42579800-42586400 Strong transcription Primary neutrophils fromperipheralblood blood
39 chr15:42580600-42590400 Weak transcription HepG2 liver
40 chr15:42580800-42586800 Strong transcription Left Ventricle heart
41 chr15:42581000-42587400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
42 chr15:42581000-42588200 Strong transcription Liver Liver
43 chr15:42581000-42590800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr15:42581000-42590800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr15:42581600-42586600 Strong transcription Fetal Intestine Large intestine
46 chr15:42581600-42601600 Weak transcription Rectal Smooth Muscle rectum
47 chr15:42581800-42602600 Weak transcription HMEC breast
48 chr15:42582000-42601000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr15:42582000-42613400 Weak transcription HUVEC blood vessel
50 chr15:42583000-42586600 Strong transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015