Variant report

Variant	rs7169553
Chromosome Location	chr15:42601407-42601408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:42601244-42601488	T-47D	breast:	n/a	chr15:42601377-42601392
2	GATA3	chr15:42601044-42601594	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000260571	TF binding region

Extended variants
information (count: 262 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:256)

rs_ID	r²[population]
rs10518757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11070363	0.82[CHB][hapmap]
rs11070367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11070369	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11070371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631711	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11631756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11631823	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11631922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11633276	1.00[EUR][1000 genomes]
rs11635876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11637010	1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11637045	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11856797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11856807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858453	1.00[ASN][1000 genomes]
rs12102204	1.00[EUR][1000 genomes]
rs12324205	1.00[JPT][hapmap]
rs12437815	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12441027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12592200	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12902924	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903494	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12907489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12913755	1.00[ASN][1000 genomes]
rs12915946	0.82[CHB][hapmap]
rs12916523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12916792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12917071	0.82[CHB][hapmap]
rs1616957	0.82[CHB][hapmap]
rs1630294	0.82[CHB][hapmap]
rs1659214	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1659215	0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1659216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1659220	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1659221	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1659223	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1659224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1659225	1.00[EUR][1000 genomes]
rs1659226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1678988	0.82[CHB][hapmap]
rs1678989	0.82[CHB][hapmap]
rs1678995	0.82[CHB][hapmap]
rs1678997	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1678998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1678999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1679011	0.82[CHB][hapmap]
rs1703748	0.82[CHB][hapmap]
rs1712390	0.82[CHB][hapmap]
rs1712397	0.82[CHB][hapmap]
rs1712408	0.82[CHB][hapmap]
rs1712409	0.82[CHB][hapmap]
rs1712417	0.82[CHB][hapmap]
rs1712420	0.82[CHB][hapmap]
rs1712442	0.82[CHB][hapmap]
rs2244773	1.00[EUR][1000 genomes]
rs2289293	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2289297	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412675	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2412676	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2412677	1.00[ASN][1000 genomes]
rs2412678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412681	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2412683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412684	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412689	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412694	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412696	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2412697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412698	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412699	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412700	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2412701	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2412702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2412716	1.00[EUR][1000 genomes]
rs2578651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595935	1.00[EUR][1000 genomes]
rs2620372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620374	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2620375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2620380	0.82[CHB][hapmap]
rs2620383	0.82[CHB][hapmap]
rs2620387	0.82[CHB][hapmap]
rs2663096	0.82[CHB][hapmap]
rs28364379	1.00[EUR][1000 genomes]
rs28364398	1.00[EUR][1000 genomes]
rs28364400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28364462	1.00[EUR][1000 genomes]
rs28364472	1.00[EUR][1000 genomes]
rs28364475	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28364491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs28364495	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs28364498	1.00[EUR][1000 genomes]
rs28364500	1.00[EUR][1000 genomes]
rs28364503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs28364504	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs28364507	1.00[EUR][1000 genomes]
rs28364508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28364509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs28364511	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs28364519	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs28364522	1.00[EUR][1000 genomes]
rs28364523	1.00[EUR][1000 genomes]
rs28364524	1.00[EUR][1000 genomes]
rs28364526	1.00[EUR][1000 genomes]
rs28364540	1.00[EUR][1000 genomes]
rs28364541	1.00[EUR][1000 genomes]
rs28364544	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs28364557	1.00[EUR][1000 genomes]
rs28364559	1.00[CHB][hapmap]
rs28489155	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28621687	1.00[EUR][1000 genomes]
rs28745879	1.00[EUR][1000 genomes]
rs2899044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2918458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3098422	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3101895	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3736095	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3736096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3736097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3743002	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3743003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3803342	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs4244589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4268723	1.00[ASN][1000 genomes]
rs4293347	0.86[AFR][1000 genomes]
rs4480780	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4556762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583208	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs4583209	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4595775	1.00[ASN][1000 genomes]
rs4617834	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4923934	0.82[CHB][hapmap]
rs4923935	0.82[CHB][hapmap]
rs4923936	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923938	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4923939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4923942	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4923944	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924633	0.82[CHB][hapmap]
rs4924636	0.82[CHB][hapmap]
rs4924638	0.82[CHB][hapmap]
rs4924640	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4924641	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924642	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924643	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924649	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924655	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924656	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924657	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924659	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5028173	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028174	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5029919	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs57052341	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs588695	0.82[CHB][hapmap]
rs593910	0.82[CHB][hapmap]
rs595661	1.00[EUR][1000 genomes]
rs602270	0.82[CHB][hapmap]
rs607959	0.82[CHB][hapmap]
rs613090	0.82[CHB][hapmap]
rs613157	0.82[CHB][hapmap]
rs614733	0.82[CHB][hapmap]
rs614774	1.00[CHB][hapmap]
rs615023	0.82[CHB][hapmap]
rs621365	0.82[CHB][hapmap]
rs629255	0.82[CHB][hapmap]
rs636604	0.82[CHB][hapmap]
rs637445	0.82[CHB][hapmap]
rs638240	0.82[CHB][hapmap]
rs644627	0.82[CHB][hapmap]
rs645304	0.82[CHB][hapmap]
rs648720	0.82[CHB][hapmap]
rs6493024	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493028	1.00[ASN][1000 genomes]
rs6493029	1.00[ASN][1000 genomes]
rs6493031	1.00[EUR][1000 genomes]
rs6493034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493037	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6493038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493039	1.00[ASN][1000 genomes]
rs6493040	1.00[ASN][1000 genomes]
rs6493041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493047	1.00[EUR][1000 genomes]
rs652192	0.82[CHB][hapmap]
rs655704	1.00[EUR][1000 genomes]
rs659354	0.82[CHB][hapmap]
rs668973	0.82[CHB][hapmap]
rs672946	0.82[CHB][hapmap]
rs67384392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677845	0.82[CHB][hapmap]
rs683227	0.82[CHB][hapmap]
rs683579	0.82[CHB][hapmap]
rs685447	1.00[EUR][1000 genomes]
rs7161982	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7163345	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7163941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7164480	0.91[ASN][1000 genomes]
rs7164484	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7167306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7169279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7170592	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7170943	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171379	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7171709	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7172709	0.82[ASN][1000 genomes]
rs7173358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7176663	0.97[ASN][1000 genomes]
rs7176724	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7177193	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177463	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177521	1.00[EUR][1000 genomes]
rs7178396	1.00[EUR][1000 genomes]
rs7182777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182963	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7183399	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7183843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023568	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023678	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8024390	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8025364	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8030212	1.00[ASN][1000 genomes]
rs8030650	0.82[CHB][hapmap]
rs8031735	0.82[CHB][hapmap]
rs8037100	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[ASN][1000 genomes]
rs8037627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8040698	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8040720	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042603	1.00[EUR][1000 genomes]
rs8043033	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8043515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8108	0.82[CHB][hapmap]
rs936603	1.00[EUR][1000 genomes]
rs9920851	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
2	chr15:42568400-42604600	Weak transcription	NH-A	brain
3	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
4	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
5	chr15:42568600-42630800	Weak transcription	Dnd41	blood
6	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:42573400-42635800	Weak transcription	Gastric	stomach
8	chr15:42573600-42602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:42573800-42605600	Weak transcription	Pancreas	Pancrea
10	chr15:42576200-42602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:42576200-42605800	Weak transcription	Esophagus	oesophagus
12	chr15:42576400-42602000	Weak transcription	Colonic Mucosa	Colon
13	chr15:42576400-42620800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:42577800-42616200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:42581600-42601600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:42581800-42602600	Weak transcription	HMEC	breast
17	chr15:42582000-42613400	Weak transcription	HUVEC	blood vessel
18	chr15:42585400-42623600	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:42585600-42602000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:42585600-42602600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:42585600-42604400	Weak transcription	Fetal Kidney	kidney
22	chr15:42585600-42607600	Weak transcription	NHLF	lung
23	chr15:42585800-42602600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:42586200-42613800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:42590400-42602600	Weak transcription	Osteobl	bone
26	chr15:42591000-42602600	Weak transcription	HSMM	muscle
27	chr15:42591000-42602800	Weak transcription	HSMMtube	muscle
28	chr15:42593800-42616000	Weak transcription	Hela-S3	cervix
29	chr15:42596000-42602800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:42596600-42604800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:42596800-42609800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:42596800-42625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:42597000-42602200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:42597000-42614600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:42597800-42621200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:42598600-42603400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:42598600-42604400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr15:42598600-42604600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr15:42598600-42606000	Strong transcription	Liver	Liver
40	chr15:42598600-42606600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:42598600-42606600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:42598600-42606800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:42598600-42607000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:42598600-42607600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:42598600-42607800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr15:42598600-42608200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr15:42598600-42610600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:42598800-42601600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:42598800-42601800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:42598800-42602800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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