Variant report

Variant	rs655704
Chromosome Location	chr15:42512665-42512666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11070367	1.00[EUR][1000 genomes]
rs11070371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633276	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856807	1.00[EUR][1000 genomes]
rs12102204	1.00[EUR][1000 genomes]
rs12902924	1.00[EUR][1000 genomes]
rs1659214	1.00[EUR][1000 genomes]
rs1659216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1659220	1.00[EUR][1000 genomes]
rs1659223	1.00[EUR][1000 genomes]
rs1659225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2289293	1.00[EUR][1000 genomes]
rs2289297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412675	1.00[EUR][1000 genomes]
rs2412676	1.00[EUR][1000 genomes]
rs2412678	1.00[EUR][1000 genomes]
rs2412683	1.00[EUR][1000 genomes]
rs2412684	1.00[EUR][1000 genomes]
rs2412689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412694	1.00[EUR][1000 genomes]
rs2412695	1.00[EUR][1000 genomes]
rs2578651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2620372	1.00[EUR][1000 genomes]
rs2665209	1.00[EUR][1000 genomes]
rs28364379	1.00[EUR][1000 genomes]
rs28364398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364462	1.00[EUR][1000 genomes]
rs28364472	1.00[EUR][1000 genomes]
rs28364491	1.00[EUR][1000 genomes]
rs28364495	1.00[EUR][1000 genomes]
rs28364498	1.00[EUR][1000 genomes]
rs28364500	1.00[EUR][1000 genomes]
rs28364503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364504	1.00[EUR][1000 genomes]
rs28364507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364509	1.00[EUR][1000 genomes]
rs28364511	1.00[EUR][1000 genomes]
rs28364519	1.00[EUR][1000 genomes]
rs28364522	1.00[EUR][1000 genomes]
rs28364523	1.00[EUR][1000 genomes]
rs28364524	1.00[EUR][1000 genomes]
rs28364526	1.00[EUR][1000 genomes]
rs28489155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28745879	1.00[EUR][1000 genomes]
rs2899044	1.00[EUR][1000 genomes]
rs3743002	1.00[EUR][1000 genomes]
rs3803342	1.00[EUR][1000 genomes]
rs4556762	1.00[EUR][1000 genomes]
rs4923936	1.00[EUR][1000 genomes]
rs4923937	1.00[EUR][1000 genomes]
rs4923939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4924640	1.00[EUR][1000 genomes]
rs4924641	1.00[EUR][1000 genomes]
rs4924642	1.00[EUR][1000 genomes]
rs4924643	1.00[EUR][1000 genomes]
rs4924649	1.00[EUR][1000 genomes]
rs4924657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4924670	1.00[EUR][1000 genomes]
rs5028173	1.00[EUR][1000 genomes]
rs595661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493024	1.00[EUR][1000 genomes]
rs6493026	1.00[EUR][1000 genomes]
rs6493031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493034	1.00[EUR][1000 genomes]
rs6493038	1.00[EUR][1000 genomes]
rs6493041	1.00[EUR][1000 genomes]
rs67384392	1.00[EUR][1000 genomes]
rs685447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164484	1.00[EUR][1000 genomes]
rs7169553	1.00[EUR][1000 genomes]
rs7170943	1.00[EUR][1000 genomes]
rs7177193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177463	1.00[EUR][1000 genomes]
rs7181758	1.00[AMR][1000 genomes]
rs7182777	1.00[EUR][1000 genomes]
rs7183399	1.00[EUR][1000 genomes]
rs7183843	1.00[EUR][1000 genomes]
rs8023568	1.00[EUR][1000 genomes]
rs8023678	1.00[EUR][1000 genomes]
rs8040720	1.00[EUR][1000 genomes]
rs8042603	1.00[EUR][1000 genomes]
rs8043033	1.00[EUR][1000 genomes]
rs936603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1054102	chr15:42493052-42528765	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42500600-42513800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:42500800-42563200	Weak transcription	Stomach Mucosa	stomach
3	chr15:42501000-42512800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:42501000-42513600	Strong transcription	HSMM	muscle
5	chr15:42501000-42518600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:42501000-42518800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:42501000-42520800	Weak transcription	Psoas Muscle	Psoas
8	chr15:42501000-42534800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:42501000-42536600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:42501000-42536800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:42501000-42538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:42501200-42513000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:42501200-42514200	Weak transcription	Right Ventricle	heart
14	chr15:42501200-42514600	Weak transcription	Pancreas	Pancrea
15	chr15:42501200-42523200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:42501200-42532400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr15:42501400-42512800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:42501400-42513000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:42501600-42512800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:42501600-42513000	Strong transcription	Liver	Liver
21	chr15:42501800-42536800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:42502000-42512800	Strong transcription	Osteobl	bone
23	chr15:42502000-42521200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:42502000-42535000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:42502200-42512800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:42502200-42512800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:42502200-42512800	Strong transcription	NH-A	brain
28	chr15:42502200-42512800	Strong transcription	NHDF-Ad	bronchial
29	chr15:42502200-42513000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr15:42502200-42534000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:42502200-42536600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:42502400-42519600	Strong transcription	Fetal Intestine Large	intestine
33	chr15:42502800-42535200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:42502800-42536400	Strong transcription	Fetal Muscle Leg	muscle
35	chr15:42503200-42517600	Weak transcription	Gastric	stomach
36	chr15:42503200-42544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:42504000-42516200	Weak transcription	Esophagus	oesophagus
38	chr15:42504000-42516200	Weak transcription	A549	lung
39	chr15:42504000-42517800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:42505400-42512800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:42505800-42513000	Weak transcription	Fetal Stomach	stomach
42	chr15:42505800-42513800	Weak transcription	Thymus	Thymus
43	chr15:42505800-42514000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:42505800-42514200	Weak transcription	Aorta	Aorta
45	chr15:42505800-42515600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr15:42505800-42516200	Weak transcription	Spleen	Spleen
47	chr15:42505800-42516400	Weak transcription	Small Intestine	intestine
48	chr15:42506800-42532000	Strong transcription	Placenta	Placenta
49	chr15:42507200-42512800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:42507200-42514000	Weak transcription	Left Ventricle	heart

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