Variant report

Variant	rs11633276
Chromosome Location	chr15:42572796-42572797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42568840..42573155-chr15:42578082..42582332,4	K562	blood:
2	chr15:42568979..42570543-chr15:42572513..42574015,2	K562	blood:
3	chr15:42564714..42568797-chr15:42571510..42577176,8	K562	blood:

Variant related genes	Relation type
ENSG00000214013	Chromatin interaction
ENSG00000103978	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11070367	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11070371	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856807	1.00[EUR][1000 genomes]
rs12102204	1.00[EUR][1000 genomes]
rs12441027	1.00[TSI][hapmap]
rs12902924	1.00[EUR][1000 genomes]
rs1659214	1.00[EUR][1000 genomes]
rs1659216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1659220	1.00[EUR][1000 genomes]
rs1659223	1.00[EUR][1000 genomes]
rs1659225	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1678998	1.00[TSI][hapmap]
rs2244773	1.00[EUR][1000 genomes]
rs2289293	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2289297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412675	1.00[EUR][1000 genomes]
rs2412676	1.00[EUR][1000 genomes]
rs2412678	1.00[EUR][1000 genomes]
rs2412681	1.00[TSI][hapmap]
rs2412683	1.00[EUR][1000 genomes]
rs2412684	1.00[EUR][1000 genomes]
rs2412689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412694	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2412695	1.00[EUR][1000 genomes]
rs2412697	1.00[TSI][hapmap]
rs2412716	1.00[EUR][1000 genomes]
rs2578651	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2620372	1.00[EUR][1000 genomes]
rs28364379	1.00[EUR][1000 genomes]
rs28364398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364400	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364462	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364472	1.00[EUR][1000 genomes]
rs28364491	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364495	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364498	1.00[EUR][1000 genomes]
rs28364500	1.00[EUR][1000 genomes]
rs28364503	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364504	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364508	1.00[TSI][hapmap]
rs28364509	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364511	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364519	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364522	1.00[EUR][1000 genomes]
rs28364523	1.00[EUR][1000 genomes]
rs28364524	1.00[EUR][1000 genomes]
rs28364526	1.00[EUR][1000 genomes]
rs28364540	1.00[EUR][1000 genomes]
rs28364541	1.00[EUR][1000 genomes]
rs28364544	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28364557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364559	1.00[TSI][hapmap]
rs28489155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28621687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28745879	1.00[EUR][1000 genomes]
rs2899044	1.00[EUR][1000 genomes]
rs3743002	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3803342	1.00[EUR][1000 genomes]
rs4556762	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4923936	1.00[EUR][1000 genomes]
rs4923937	1.00[EUR][1000 genomes]
rs4923939	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923941	1.00[TSI][hapmap]
rs4924640	1.00[EUR][1000 genomes]
rs4924641	1.00[EUR][1000 genomes]
rs4924642	1.00[EUR][1000 genomes]
rs4924643	1.00[EUR][1000 genomes]
rs4924649	1.00[EUR][1000 genomes]
rs4924650	1.00[TSI][hapmap]
rs4924657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4924668	1.00[TSI][hapmap]
rs4924669	1.00[TSI][hapmap]
rs4924670	1.00[EUR][1000 genomes]
rs4924671	1.00[TSI][hapmap]
rs5028173	1.00[EUR][1000 genomes]
rs595661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493024	1.00[EUR][1000 genomes]
rs6493026	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6493031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493034	1.00[EUR][1000 genomes]
rs6493038	1.00[EUR][1000 genomes]
rs6493041	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs655704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67384392	1.00[EUR][1000 genomes]
rs685447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164484	1.00[EUR][1000 genomes]
rs7169553	1.00[EUR][1000 genomes]
rs7170943	1.00[EUR][1000 genomes]
rs7177193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177463	1.00[EUR][1000 genomes]
rs7177521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178396	1.00[EUR][1000 genomes]
rs7181758	1.00[AMR][1000 genomes]
rs7182777	1.00[EUR][1000 genomes]
rs7183399	1.00[EUR][1000 genomes]
rs7183843	1.00[EUR][1000 genomes]
rs8023568	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8023678	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8040720	1.00[EUR][1000 genomes]
rs8042603	1.00[EUR][1000 genomes]
rs8043033	1.00[EUR][1000 genomes]
rs936603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv1807328	chr15:42525300-42573278	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42566400-42576000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:42566600-42575000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:42567000-42578600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:42567200-42573000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:42567200-42577200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:42567200-42577800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:42567200-42583800	Weak transcription	Fetal Kidney	kidney
8	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
9	chr15:42567600-42573000	Weak transcription	Esophagus	oesophagus
10	chr15:42567600-42578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:42567600-42579200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:42568400-42574800	Weak transcription	Psoas Muscle	Psoas
13	chr15:42568400-42604600	Weak transcription	NH-A	brain
14	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
15	chr15:42568600-42573000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:42568600-42573000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:42568600-42575000	Weak transcription	A549	lung
18	chr15:42568600-42581200	Weak transcription	HUVEC	blood vessel
19	chr15:42568600-42581400	Weak transcription	Stomach Mucosa	stomach
20	chr15:42568600-42583800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:42568600-42584600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:42568600-42584800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:42568600-42585000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:42568600-42585200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:42568600-42587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:42568600-42587000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:42568600-42593000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
29	chr15:42568600-42630800	Weak transcription	Dnd41	blood
30	chr15:42568800-42572800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:42568800-42575200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:42568800-42577400	Weak transcription	Hela-S3	cervix
33	chr15:42568800-42577800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:42568800-42583600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:42569000-42591000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr15:42569200-42572800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:42569200-42577200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:42569400-42577000	Strong transcription	Fetal Stomach	stomach
39	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:42570000-42576600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:42570200-42573600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:42570200-42574000	Strong transcription	HSMM	muscle
43	chr15:42570200-42576400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:42570200-42577000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:42570200-42577200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:42570200-42577200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:42570200-42585600	Strong transcription	Primary B cells from cord blood	blood
48	chr15:42570200-42585800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:42570200-42586600	Strong transcription	Adipose Nuclei	Adipose
50	chr15:42570400-42573600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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