The 2.0 version of rSNPBase

Variant report

Variant rs28364498
Chromosome Location chr15:42695718-42695719
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42656800-42697800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr15:42675200-42702800 Weak transcription Colon Smooth Muscle Colon
3 chr15:42678600-42706800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr15:42678800-42702800 Weak transcription NHLF lung
5 chr15:42679000-42706800 Weak transcription Right Atrium heart
6 chr15:42680200-42696400 Weak transcription HSMMtube muscle
7 chr15:42683800-42704600 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr15:42689000-42697800 Weak transcription NHEK skin
9 chr15:42689000-42712400 Weak transcription Fetal Brain Male brain
10 chr15:42689400-42696800 Weak transcription Psoas Muscle Psoas
11 chr15:42689400-42703200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr15:42689800-42706600 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr15:42690800-42702400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr15:42691000-42703000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr15:42691200-42696000 Strong transcription Fetal Muscle Leg muscle
16 chr15:42691200-42696200 Strong transcription Primary B cells from peripheral blood blood
17 chr15:42691200-42696400 Strong transcription Liver Liver
18 chr15:42691200-42697000 Strong transcription Breast Myoepithelial Primary Cells Breast
19 chr15:42691400-42696400 Strong transcription Primary B cells from cord blood blood
20 chr15:42691400-42696800 Strong transcription Duodenum Mucosa Duodenum
21 chr15:42691400-42697200 Strong transcription Sigmoid Colon Sigmoid Colon
22 chr15:42691600-42697400 Strong transcription Stomach Smooth Muscle stomach
23 chr15:42692400-42702400 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr15:42692600-42695800 Weak transcription Brain Angular Gyrus brain
25 chr15:42692600-42702400 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr15:42692600-42702400 Weak transcription Aorta Aorta
27 chr15:42692600-42708400 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr15:42692800-42702800 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr15:42693200-42697000 Strong transcription Fetal Stomach stomach
30 chr15:42693400-42696000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr15:42693600-42697000 Strong transcription Adipose Nuclei Adipose
32 chr15:42693600-42697200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
33 chr15:42693600-42703000 Weak transcription Brain Germinal Matrix brain
34 chr15:42693800-42696000 Strong transcription Esophagus oesophagus
35 chr15:42693800-42696400 Strong transcription Rectal Mucosa Donor 29 rectum
36 chr15:42693800-42696600 Strong transcription Ovary ovary
37 chr15:42693800-42696600 Strong transcription Placenta Amnion Placenta Amnion
38 chr15:42693800-42696800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr15:42693800-42696800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr15:42693800-42697000 Strong transcription Lung lung
41 chr15:42693800-42697000 Strong transcription Right Ventricle heart
42 chr15:42693800-42697200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr15:42694000-42696600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr15:42694000-42696800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
45 chr15:42694000-42703000 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr15:42694200-42702400 Weak transcription Placenta Placenta
47 chr15:42694200-42704000 Weak transcription Small Intestine intestine
48 chr15:42694400-42695800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr15:42694400-42696800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr15:42694600-42697400 Genic enhancers Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015