Variant report

Variant	rs12911561
Chromosome Location	chr15:42868357-42868358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155903608..155904383-chr15:42867723..42868723,3	Hela-S3	cervix:
2	chr15:42866660..42868750-chr15:42872207..42873779,2	K562	blood:
3	chr15:42838345..42842657-chr15:42865696..42868936,4	MCF-7	breast:
4	chr15:42867826..42868650-chr21:36260005..36261002,2	Hela-S3	cervix:
5	chr15:42866281..42869584-chr15:42871180..42873707,4	K562	blood:
6	chr15:42838709..42841070-chr15:42866779..42868984,2	MCF-7	breast:
7	chr15:42840090..42842755-chr15:42865653..42870684,5	K562	blood:
8	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:
9	chr15:42801179..42804150-chr15:42867351..42869271,2	K562	blood:
10	chr15:42867986..42870891-chr15:43024060..43026740,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137814	Chromatin interaction
ENSG00000092531	Chromatin interaction
ENSG00000260490	Chromatin interaction
ENSG00000159216	Chromatin interaction
ENSG00000260282	Chromatin interaction
ENSG00000180979	Chromatin interaction
ENSG00000261822	Chromatin interaction
ENSG00000132680	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12102204	1.00[EUR][1000 genomes]
rs12593511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2244773	1.00[EUR][1000 genomes]
rs2289293	1.00[EUR][1000 genomes]
rs2412716	1.00[EUR][1000 genomes]
rs2595935	1.00[EUR][1000 genomes]
rs28364379	1.00[EUR][1000 genomes]
rs28364398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364462	1.00[EUR][1000 genomes]
rs28364472	1.00[EUR][1000 genomes]
rs28364491	1.00[EUR][1000 genomes]
rs28364495	1.00[EUR][1000 genomes]
rs28364498	1.00[EUR][1000 genomes]
rs28364500	1.00[EUR][1000 genomes]
rs28364503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364504	1.00[EUR][1000 genomes]
rs28364507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364509	1.00[EUR][1000 genomes]
rs28364511	1.00[EUR][1000 genomes]
rs28364519	1.00[EUR][1000 genomes]
rs28364522	1.00[EUR][1000 genomes]
rs28364523	1.00[EUR][1000 genomes]
rs28364524	1.00[EUR][1000 genomes]
rs28364526	1.00[EUR][1000 genomes]
rs28364540	1.00[EUR][1000 genomes]
rs28364541	1.00[EUR][1000 genomes]
rs28364544	1.00[EUR][1000 genomes]
rs28364557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28489155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28621687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28745879	1.00[EUR][1000 genomes]
rs2899058	1.00[EUR][1000 genomes]
rs3743002	1.00[EUR][1000 genomes]
rs3803342	1.00[EUR][1000 genomes]
rs6493047	1.00[EUR][1000 genomes]
rs6493051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178396	1.00[EUR][1000 genomes]
rs7181940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183399	1.00[EUR][1000 genomes]
rs8036149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036993	1.00[EUR][1000 genomes]
rs8042603	1.00[EUR][1000 genomes]
rs8043033	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976927	chr15:42862948-42868443	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42867000-42868400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:42867000-42868400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:42867000-42868400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:42867000-42868400	Active TSS	Brain Angular Gyrus	brain
5	chr15:42867000-42868400	Active TSS	Brain Substantia Nigra	brain
6	chr15:42867000-42868400	Active TSS	A549	lung
7	chr15:42867000-42868600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:42867000-42868600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr15:42867000-42868600	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr15:42867000-42868600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr15:42867000-42868600	Active TSS	HSMMtube	muscle
12	chr15:42867000-42868800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr15:42867000-42868800	Active TSS	Psoas Muscle	Psoas
14	chr15:42867000-42869000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr15:42867000-42869000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:42867000-42869000	Active TSS	Fetal Kidney	kidney
17	chr15:42867000-42869000	Active TSS	Right Atrium	heart
18	chr15:42867200-42868400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:42867200-42868400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:42867200-42868400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:42867200-42868400	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr15:42867200-42868400	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr15:42867200-42868400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:42867200-42868400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:42867200-42868400	Active TSS	Brain Anterior Caudate	brain
26	chr15:42867200-42868400	Active TSS	Brain Hippocampus Middle	brain
27	chr15:42867200-42868400	Active TSS	Fetal Brain Female	brain
28	chr15:42867200-42868400	Active TSS	Rectal Smooth Muscle	rectum
29	chr15:42867200-42868400	Active TSS	Spleen	Spleen
30	chr15:42867200-42868400	Active TSS	NHLF	lung
31	chr15:42867200-42868600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:42867200-42868600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:42867200-42868600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:42867200-42868600	Active TSS	Colon Smooth Muscle	Colon
35	chr15:42867200-42868600	Active TSS	Esophagus	oesophagus
36	chr15:42867200-42868800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:42867200-42868800	Active TSS	Lung	lung
38	chr15:42867200-42868800	Active TSS	Right Ventricle	heart
39	chr15:42867200-42869000	Active TSS	Ovary	ovary
40	chr15:42867400-42868400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:42867400-42868400	Active TSS	Primary B cells from peripheral blood	blood
42	chr15:42867400-42868400	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr15:42867400-42868400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:42867400-42868400	Active TSS	Fetal Muscle Leg	muscle
45	chr15:42867400-42868400	Active TSS	Small Intestine	intestine
46	chr15:42867400-42868400	Active TSS	Thymus	Thymus
47	chr15:42867400-42868400	Active TSS	GM12878-XiMat	blood
48	chr15:42867400-42868400	Active TSS	HSMM	muscle
49	chr15:42867400-42868400	Active TSS	K562	blood
50	chr15:42867400-42868600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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