Variant report
| Variant | rs28745879 |
|---|---|
| Chromosome Location | chr15:42691253-42691254 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:42653200-42691600 | Weak transcription | Stomach Smooth Muscle | stomach |
| 2 | chr15:42656800-42693400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 3 | chr15:42656800-42697800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 4 | chr15:42663000-42691400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 5 | chr15:42673400-42691800 | Weak transcription | Primary T cells from cord blood | blood |
| 6 | chr15:42674000-42694400 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 7 | chr15:42675200-42702800 | Weak transcription | Colon Smooth Muscle | Colon |
| 8 | chr15:42675600-42691600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 9 | chr15:42676800-42693200 | Weak transcription | Fetal Stomach | stomach |
| 10 | chr15:42677000-42693400 | Weak transcription | GM12878-XiMat | blood |
| 11 | chr15:42678600-42706800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 12 | chr15:42678800-42691600 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
| 13 | chr15:42678800-42694000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 14 | chr15:42678800-42702800 | Weak transcription | NHLF | lung |
| 15 | chr15:42679000-42691400 | Weak transcription | Thymus | Thymus |
| 16 | chr15:42679000-42706800 | Weak transcription | Right Atrium | heart |
| 17 | chr15:42679200-42691600 | Weak transcription | Brain Anterior Caudate | brain |
| 18 | chr15:42679200-42694000 | Weak transcription | Brain Cingulate Gyrus | brain |
| 19 | chr15:42679600-42691400 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 20 | chr15:42680000-42693200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 21 | chr15:42680200-42691400 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 22 | chr15:42680200-42694000 | Weak transcription | Left Ventricle | heart |
| 23 | chr15:42680200-42696400 | Weak transcription | HSMMtube | muscle |
| 24 | chr15:42680600-42693600 | Weak transcription | Primary hematopoietic stem cells | blood |
| 25 | chr15:42681600-42695400 | Strong transcription | Skeletal Muscle Female | skeletal muscle |
| 26 | chr15:42681800-42694600 | Strong transcription | Skeletal Muscle Male | skeletal muscle |
| 27 | chr15:42682000-42691600 | Weak transcription | Adipose Nuclei | Adipose |
| 28 | chr15:42682000-42691800 | Weak transcription | Ovary | ovary |
| 29 | chr15:42682400-42691600 | Weak transcription | Aorta | Aorta |
| 30 | chr15:42682600-42691400 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 31 | chr15:42683800-42704600 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 32 | chr15:42684000-42691400 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 33 | chr15:42685000-42693800 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 34 | chr15:42685200-42693600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 35 | chr15:42685800-42691400 | Weak transcription | Duodenum Mucosa | Duodenum |
| 36 | chr15:42686200-42694200 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 37 | chr15:42686400-42691400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 38 | chr15:42687400-42691600 | Weak transcription | Rectal Smooth Muscle | rectum |
| 39 | chr15:42687800-42691400 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 40 | chr15:42687800-42691800 | Weak transcription | Pancreas | Pancrea |
| 41 | chr15:42688000-42691400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 42 | chr15:42688200-42693800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 43 | chr15:42688400-42691400 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 44 | chr15:42688400-42691400 | Weak transcription | Brain Substantia Nigra | brain |
| 45 | chr15:42688400-42691600 | Weak transcription | Brain Angular Gyrus | brain |
| 46 | chr15:42688400-42691800 | Weak transcription | Brain Hippocampus Middle | brain |
| 47 | chr15:42688400-42693400 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
| 48 | chr15:42688800-42694400 | Strong transcription | Primary monocytes fromperipheralblood | blood |
| 49 | chr15:42689000-42691400 | Weak transcription | Primary B cells from cord blood | blood |
| 50 | chr15:42689000-42697800 | Weak transcription | NHEK | skin |
