Variant report

Variant	rs8036993
Chromosome Location	chr15:43010887-43010888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43004420..43008133-chr15:43008696..43011545,3	K562	blood:
2	chr15:43010693..43013698-chr15:43016416..43019349,5	K562	blood:

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12593511	1.00[EUR][1000 genomes]
rs12911561	1.00[EUR][1000 genomes]
rs1871156	1.00[EUR][1000 genomes]
rs2899058	1.00[EUR][1000 genomes]
rs4421951	1.00[AMR][1000 genomes]
rs6493047	1.00[EUR][1000 genomes]
rs6493051	1.00[EUR][1000 genomes]
rs6493072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164196	1.00[EUR][1000 genomes]
rs7174240	1.00[AMR][1000 genomes]
rs7181940	1.00[EUR][1000 genomes]
rs8036149	1.00[EUR][1000 genomes]
rs8036163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv517553	chr15:42970899-43023482	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
2	chr15:42975600-43011400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:42976600-43015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:42977000-43011600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:42977000-43016600	Weak transcription	Hela-S3	cervix
6	chr15:42978800-43012000	Weak transcription	NH-A	brain
7	chr15:42979200-43011000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:42981400-43015000	Weak transcription	HSMM	muscle
9	chr15:42981600-43011000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:42984000-43014800	Weak transcription	K562	blood
11	chr15:42986000-43018400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:42987800-43016400	Weak transcription	Esophagus	oesophagus
13	chr15:42989000-43011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:42993400-43015400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:42997200-43011000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:42997200-43016400	Weak transcription	Pancreas	Pancrea
17	chr15:42999800-43011800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:43000600-43011400	Weak transcription	NHEK	skin
19	chr15:43000800-43018600	Weak transcription	A549	lung
20	chr15:43001000-43014800	Weak transcription	HUVEC	blood vessel
21	chr15:43003200-43011200	Weak transcription	Fetal Heart	heart
22	chr15:43003200-43011600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:43003200-43012000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:43003400-43011000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr15:43004200-43016200	Weak transcription	Psoas Muscle	Psoas
26	chr15:43006400-43011800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:43007000-43011400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:43007200-43026800	Strong transcription	Fetal Stomach	stomach
29	chr15:43007800-43020800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:43008000-43014000	Strong transcription	Fetal Muscle Leg	muscle
31	chr15:43008000-43027600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:43008200-43013000	Strong transcription	Primary hematopoietic stem cells	blood
33	chr15:43008200-43027600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:43008200-43027800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:43008400-43020000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr15:43008400-43020400	Strong transcription	Brain Substantia Nigra	brain
37	chr15:43008600-43012800	Strong transcription	Brain Cingulate Gyrus	brain
38	chr15:43008600-43027400	Strong transcription	Fetal Brain Female	brain
39	chr15:43008800-43012600	Strong transcription	Aorta	Aorta
40	chr15:43008800-43014000	Strong transcription	Rectal Smooth Muscle	rectum
41	chr15:43008800-43014200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:43008800-43017200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:43008800-43018400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:43008800-43019800	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr15:43008800-43026600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:43008800-43027200	Strong transcription	Brain Germinal Matrix	brain
47	chr15:43008800-43027200	Strong transcription	Lung	lung
48	chr15:43008800-43027400	Strong transcription	Adipose Nuclei	Adipose
49	chr15:43008800-43027800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:43009000-43012800	Strong transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links