Variant report

Variant	rs2665209
Chromosome Location	chr15:42326850-42326851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42326664..42329520-chr15:42335867..42337408,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1025227	1.00[EUR][1000 genomes]
rs1030417	1.00[EUR][1000 genomes]
rs1197656	1.00[EUR][1000 genomes]
rs1197676	1.00[EUR][1000 genomes]
rs1197678	1.00[EUR][1000 genomes]
rs1197695	1.00[EUR][1000 genomes]
rs1197696	1.00[EUR][1000 genomes]
rs1197698	1.00[EUR][1000 genomes]
rs1201692	1.00[EUR][1000 genomes]
rs1451047	1.00[EUR][1000 genomes]
rs1530836	1.00[EUR][1000 genomes]
rs1614205	1.00[EUR][1000 genomes]
rs1621597	1.00[EUR][1000 genomes]
rs1648808	1.00[EUR][1000 genomes]
rs1648812	1.00[EUR][1000 genomes]
rs1648819	1.00[EUR][1000 genomes]
rs1648820	1.00[EUR][1000 genomes]
rs1668566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1668590	1.00[EUR][1000 genomes]
rs1668591	1.00[EUR][1000 genomes]
rs1704408	1.00[EUR][1000 genomes]
rs1704409	1.00[EUR][1000 genomes]
rs2724932	1.00[EUR][1000 genomes]
rs57032192	1.00[EUR][1000 genomes]
rs595661	1.00[EUR][1000 genomes]
rs655704	1.00[EUR][1000 genomes]
rs685447	1.00[EUR][1000 genomes]
rs73410628	1.00[EUR][1000 genomes]
rs890499	1.00[EUR][1000 genomes]
rs890500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv904130	chr15:42323591-42336018	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42320400-42327200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:42322000-42327200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:42324200-42327800	Enhancers	Esophagus	oesophagus
4	chr15:42325200-42327200	Weak transcription	Placenta	Placenta
5	chr15:42325400-42327200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:42325400-42328400	Weak transcription	Right Ventricle	heart
7	chr15:42325400-42328800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:42325600-42327200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:42325600-42327200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:42325600-42327600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:42325800-42327200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:42325800-42327400	Enhancers	HMEC	breast
13	chr15:42326000-42327000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:42326000-42327200	Weak transcription	Lung	lung
15	chr15:42326000-42327400	Weak transcription	Colonic Mucosa	Colon
16	chr15:42326000-42328000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:42326000-42329000	Enhancers	Primary B cells from cord blood	blood
18	chr15:42326200-42327200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:42326200-42327200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:42326200-42327200	Enhancers	HepG2	liver
21	chr15:42326200-42337200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:42326600-42327000	Enhancers	NHEK	skin
23	chr15:42326600-42327200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:42326600-42328200	Flanking Active TSS	GM12878-XiMat	blood
25	chr15:42326600-42328400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr15:42326800-42327400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr15:42326800-42328600	Enhancers	Rectal Mucosa Donor 29	rectum

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