Variant report

Variant	rs1648812
Chromosome Location	chr15:42195751-42195752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42194241..42196970-chr15:42258249..42260328,2	K562	blood:
2	chr15:42176708..42178291-chr15:42195146..42197616,2	K562	blood:
3	chr15:42184791..42187118-chr15:42195366..42196977,2	K562	blood:
4	chr15:42184589..42187118-chr15:42195366..42198157,2	K562	blood:

Variant related genes	Relation type
ENSG00000174171	Chromatin interaction
ENSG00000137877	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1025227	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1030417	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1197656	1.00[EUR][1000 genomes]
rs1197676	1.00[EUR][1000 genomes]
rs1197678	1.00[EUR][1000 genomes]
rs1197695	1.00[EUR][1000 genomes]
rs1197696	1.00[EUR][1000 genomes]
rs1197698	1.00[EUR][1000 genomes]
rs1201692	1.00[EUR][1000 genomes]
rs12900408	1.00[EUR][1000 genomes]
rs1451047	1.00[EUR][1000 genomes]
rs1530836	1.00[EUR][1000 genomes]
rs1614205	1.00[EUR][1000 genomes]
rs1621597	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1648808	1.00[EUR][1000 genomes]
rs1648813	0.99[AFR][1000 genomes]
rs1648819	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1648820	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1668566	1.00[EUR][1000 genomes]
rs1668590	1.00[EUR][1000 genomes]
rs1668591	1.00[EUR][1000 genomes]
rs1704408	1.00[EUR][1000 genomes]
rs1704409	1.00[EUR][1000 genomes]
rs2665209	1.00[EUR][1000 genomes]
rs2724932	1.00[EUR][1000 genomes]
rs57032192	1.00[EUR][1000 genomes]
rs6493009	1.00[EUR][1000 genomes]
rs73410628	1.00[EUR][1000 genomes]
rs890497	1.00[EUR][1000 genomes]
rs890499	1.00[EUR][1000 genomes]
rs890500	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	esv1827003	chr15:42087505-42199076	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
6	nsv904118	chr15:42103822-42207905	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv904124	chr15:42109975-42207905	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv9244	chr15:42110712-42208805	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv904125	chr15:42119900-42210393	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
11	nsv904127	chr15:42142912-42207905	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv904128	chr15:42147639-42207905	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
13	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
14	nsv904129	chr15:42162957-42207905	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42183600-42195800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:42183600-42196000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:42183800-42195800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:42186800-42198800	Weak transcription	Brain Substantia Nigra	brain
5	chr15:42187200-42211800	Weak transcription	Small Intestine	intestine
6	chr15:42187400-42196600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:42187600-42196400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:42187600-42196600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:42187600-42196600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:42187600-42198800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:42187600-42200400	Weak transcription	Stomach Mucosa	stomach
12	chr15:42187600-42200600	Weak transcription	HepG2	liver
13	chr15:42187600-42209800	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:42187800-42196200	Weak transcription	Brain Angular Gyrus	brain
15	chr15:42187800-42196400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:42187800-42196600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:42187800-42198000	Strong transcription	Fetal Intestine Small	intestine
18	chr15:42187800-42206800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:42188000-42196000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:42188000-42197000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:42188000-42198600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:42188000-42198800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:42188400-42195800	Strong transcription	Fetal Muscle Leg	muscle
24	chr15:42188400-42197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:42188400-42197000	Strong transcription	Lung	lung
26	chr15:42188600-42196600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:42188600-42209600	Strong transcription	NHEK	skin
28	chr15:42188800-42195800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:42189000-42196400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:42189000-42198200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:42189200-42197400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:42189400-42198800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:42189800-42208400	Strong transcription	HUVEC	blood vessel
34	chr15:42190000-42196000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:42190000-42197000	Weak transcription	Fetal Thymus	thymus
36	chr15:42190200-42209800	Weak transcription	Hela-S3	cervix
37	chr15:42190400-42218600	Weak transcription	Fetal Lung	lung
38	chr15:42191200-42196600	Strong transcription	GM12878-XiMat	blood
39	chr15:42191600-42197000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:42191600-42197200	Weak transcription	Primary B cells from cord blood	blood
41	chr15:42191600-42198600	Weak transcription	Osteobl	bone
42	chr15:42191800-42196400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:42191800-42196600	Weak transcription	A549	lung
44	chr15:42192200-42198000	Enhancers	Fetal Heart	heart
45	chr15:42192400-42196200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:42192400-42198600	Weak transcription	Ovary	ovary
47	chr15:42192600-42197800	Weak transcription	Primary T cells from cord blood	blood
48	chr15:42192600-42204000	Strong transcription	Esophagus	oesophagus
49	chr15:42193200-42196200	Weak transcription	Right Atrium	heart
50	chr15:42193200-42198200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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