Variant report

Variant	rs677845
Chromosome Location	chr15:42446398-42446399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42444865..42447535-chr15:42448992..42450632,2	K562	blood:
2	chr15:42445910..42447999-chr15:42452272..42454986,2	K562	blood:
3	chr15:42444314..42447262-chr15:42447408..42450681,4	K562	blood:
4	chr15:42429960..42432547-chr15:42445427..42447652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166887	Chromatin interaction
ENSG00000168907	Chromatin interaction

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs10152909	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11070363	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11070367	0.82[CHB][hapmap];1.00[GIH][hapmap];0.84[YRI][hapmap]
rs11070368	0.82[CHB][hapmap]
rs11070369	0.82[CHB][hapmap]
rs11070371	1.00[ASW][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs11631756	0.82[CHB][hapmap]
rs11631823	0.82[CHB][hapmap]
rs11631922	0.82[CHB][hapmap]
rs11635876	0.82[CHB][hapmap]
rs11856797	0.82[CHB][hapmap]
rs11856807	0.82[CHB][hapmap];0.80[YRI][hapmap]
rs12324804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12440779	0.82[ASN][1000 genomes]
rs12441027	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs12442769	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12902924	0.82[CHB][hapmap]
rs12907489	0.82[CHB][hapmap]
rs12915387	0.90[ASN][1000 genomes]
rs12915946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12916523	0.82[CHB][hapmap]
rs12916792	0.82[CHB][hapmap]
rs12917071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1616957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1619537	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1626437	1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1630294	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1659214	0.80[YRI][hapmap]
rs1659216	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs1659220	0.82[CHB][hapmap];0.86[GIH][hapmap];0.82[YRI][hapmap]
rs1659221	0.82[CHB][hapmap]
rs1659223	0.91[YRI][hapmap]
rs1659224	0.82[CHB][hapmap]
rs1659226	0.82[CHB][hapmap]
rs1678987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1678988	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1678989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1678990	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1678995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678996	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678998	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs1678999	0.82[CHB][hapmap]
rs1679000	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679001	0.98[ASN][1000 genomes]
rs1679008	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[YRI][hapmap];0.98[ASN][1000 genomes]
rs1679011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1703748	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1703751	0.96[ASN][1000 genomes]
rs1703753	0.98[ASN][1000 genomes]
rs1712390	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1712391	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs1712397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1712406	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1712407	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1712408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1712409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1712410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1712417	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1712420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1712422	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1712442	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[ASN][1000 genomes]
rs2289297	0.82[CHB][hapmap]
rs2412671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412674	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2412681	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs2412684	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs2412686	0.82[CHB][hapmap]
rs2412689	0.82[CHB][hapmap];0.90[YRI][hapmap]
rs2412690	0.82[CHB][hapmap]
rs2412691	0.82[CHB][hapmap]
rs2412694	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs2412697	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs2412702	0.82[CHB][hapmap]
rs2578651	0.82[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap]
rs2620375	0.82[CHB][hapmap]
rs2620378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620379	0.98[ASN][1000 genomes]
rs2620380	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620381	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2620383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2620387	1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2663092	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2677751	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28767320	0.94[ASN][1000 genomes]
rs2899044	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs2928333	0.98[ASN][1000 genomes]
rs3736096	0.82[CHB][hapmap]
rs3736097	0.82[CHB][hapmap]
rs4244589	0.82[CHB][hapmap]
rs4556762	0.82[CHB][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];0.91[YRI][hapmap]
rs4923934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4923935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs4923936	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs4923937	0.82[CHB][hapmap]
rs4923938	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs4923939	0.82[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs4923941	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924633	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4924635	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4924636	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4924638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4924643	0.82[CHB][hapmap]
rs4924650	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924657	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs4924662	0.82[CHB][hapmap]
rs4924663	0.82[CHB][hapmap]
rs4924664	0.82[CHB][hapmap]
rs4924665	0.82[CHB][hapmap]
rs4924666	0.82[CHB][hapmap]
rs4924668	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924669	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924670	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs4924671	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs583541	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588695	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs590540	0.98[ASN][1000 genomes]
rs593910	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598441	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs599316	0.82[ASN][1000 genomes]
rs602270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs607959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs609660	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs613090	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs613131	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs613157	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614774	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs615023	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618161	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs621365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627478	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633310	0.90[ASN][1000 genomes]
rs633483	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs635617	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs635669	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635690	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs635919	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs636604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs637445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638240	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs641119	0.98[ASN][1000 genomes]
rs644627	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs645304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647581	0.98[ASN][1000 genomes]
rs648720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493026	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs6493034	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs6493041	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs650910	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs659354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs660033	0.98[ASN][1000 genomes]
rs663454	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs665262	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665718	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670329	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670421	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677895	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs683579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs685521	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7161982	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs7163941	0.82[CHB][hapmap]
rs7167306	0.82[CHB][hapmap]
rs7169279	0.82[CHB][hapmap]
rs7169553	0.82[CHB][hapmap]
rs7170943	0.82[CHB][hapmap]
rs7173358	0.82[CHB][hapmap]
rs7177193	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs7181577	0.98[ASN][1000 genomes]
rs7183843	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs8023568	0.82[CHB][hapmap];1.00[GIH][hapmap];0.84[YRI][hapmap]
rs8023678	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs8023714	0.82[CHB][hapmap]
rs8023923	0.94[ASN][1000 genomes]
rs8024390	0.82[CHB][hapmap]
rs8025364	0.82[CHB][hapmap]
rs8030650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8031735	1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036917	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8037627	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs8043515	0.82[CHB][hapmap];0.91[YRI][hapmap]
rs8108	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9783720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920851	0.82[CHB][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv9245	chr15:42441849-42453572	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv3361173	chr15:42445160-42449558	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3446241	chr15:42445660-42448658	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42436000-42452000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:42439400-42451200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:42439400-42451800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:42439600-42448600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:42441200-42450600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:42441800-42451000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:42442600-42447000	Enhancers	Esophagus	oesophagus
8	chr15:42442600-42447400	Weak transcription	Spleen	Spleen
9	chr15:42443400-42447600	Enhancers	Gastric	stomach
10	chr15:42443600-42447000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:42443600-42447600	Enhancers	Colonic Mucosa	Colon
12	chr15:42443800-42446400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr15:42443800-42448000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:42444000-42451600	Weak transcription	HUVEC	blood vessel
15	chr15:42444400-42446400	Strong transcription	Fetal Intestine Small	intestine
16	chr15:42444400-42446600	Weak transcription	Fetal Thymus	thymus
17	chr15:42444400-42447000	Weak transcription	Fetal Kidney	kidney
18	chr15:42444400-42450400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:42444600-42448200	Weak transcription	HSMMtube	muscle
20	chr15:42444600-42450200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:42444800-42446600	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:42444800-42447000	Weak transcription	Fetal Lung	lung
23	chr15:42444800-42449800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:42444800-42450200	Weak transcription	Brain Substantia Nigra	brain
25	chr15:42444800-42450200	Weak transcription	HSMM	muscle
26	chr15:42444800-42450600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:42444800-42450600	Weak transcription	Brain Germinal Matrix	brain
28	chr15:42444800-42451000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:42444800-42451000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:42444800-42451200	Weak transcription	Aorta	Aorta
31	chr15:42445000-42446400	Weak transcription	HMEC	breast
32	chr15:42445000-42446600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:42445000-42446600	Weak transcription	Fetal Heart	heart
34	chr15:42445000-42446600	Weak transcription	NHEK	skin
35	chr15:42445000-42449800	Weak transcription	Brain Anterior Caudate	brain
36	chr15:42445000-42450000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:42445000-42450000	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:42445000-42450200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:42445000-42451400	Weak transcription	Brain Angular Gyrus	brain
40	chr15:42445200-42446600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:42445400-42447000	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr15:42445400-42451000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:42445400-42451000	Weak transcription	Right Atrium	heart
44	chr15:42445600-42446600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:42445600-42449000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:42445800-42446400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:42445800-42447000	Weak transcription	Lung	lung
48	chr15:42445800-42450200	Weak transcription	Psoas Muscle	Psoas
49	chr15:42446000-42450000	Enhancers	Right Ventricle	heart
50	chr15:42446000-42451000	Weak transcription	H9 Cell Line	embryonic stem cell

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