Variant report

Variant	rs1626437
Chromosome Location	chr15:42453278-42453279
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42452722..42455427-chr15:42457119..42459983,4	K562	blood:

Variant related genes	Relation type
ENSG00000166887	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10152909	0.86[ASN][1000 genomes]
rs11070363	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12324804	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12440779	0.82[ASN][1000 genomes]
rs12442769	0.86[ASN][1000 genomes]
rs12915387	0.90[ASN][1000 genomes]
rs12915946	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12917071	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1616957	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1619030	0.81[JPT][hapmap]
rs1619537	0.94[ASN][1000 genomes]
rs1630294	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1678987	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1678988	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1678989	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1678990	0.90[ASN][1000 genomes]
rs1678995	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1678996	1.00[ASN][1000 genomes]
rs1679000	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1679001	0.98[ASN][1000 genomes]
rs1679008	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1679009	0.81[JPT][hapmap]
rs1679010	0.81[JPT][hapmap]
rs1679011	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1703748	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1703750	0.81[JPT][hapmap]
rs1703751	0.96[ASN][1000 genomes]
rs1703753	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1712390	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1712391	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1712397	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1712406	0.94[ASN][1000 genomes]
rs1712407	1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1712408	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1712409	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1712410	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1712417	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1712420	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1712422	0.94[ASN][1000 genomes]
rs1712442	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2412671	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2412674	0.94[ASN][1000 genomes]
rs2620378	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2620379	0.98[ASN][1000 genomes]
rs2620380	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2620381	0.92[ASN][1000 genomes]
rs2620383	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2620387	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2663092	1.00[ASN][1000 genomes]
rs2663096	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2677751	1.00[ASN][1000 genomes]
rs28767320	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2928333	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4923934	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4923935	1.00[JPT][hapmap]
rs4924633	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4924635	0.86[ASN][1000 genomes]
rs4924636	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4924638	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs583541	0.96[ASN][1000 genomes]
rs588695	1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590540	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs593910	1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs598441	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs599316	0.82[ASN][1000 genomes]
rs602270	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs603468	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs607959	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs609660	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs613090	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs613131	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs613157	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs614733	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs614774	1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs615023	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs616071	1.00[ASN][1000 genomes]
rs618161	0.94[ASN][1000 genomes]
rs621365	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs622442	0.81[JPT][hapmap]
rs627478	1.00[ASN][1000 genomes]
rs629255	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs633310	0.90[ASN][1000 genomes]
rs633483	1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs633934	0.81[JPT][hapmap]
rs635617	1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs635669	1.00[ASN][1000 genomes]
rs635690	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs635919	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs636604	1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs637445	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs638240	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs641119	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs644627	1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645304	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs647581	0.98[ASN][1000 genomes]
rs648720	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs650910	1.00[ASN][1000 genomes]
rs652192	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs659354	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs660033	0.98[ASN][1000 genomes]
rs660126	0.81[JPT][hapmap]
rs663454	1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs665262	1.00[ASN][1000 genomes]
rs665718	1.00[ASN][1000 genomes]
rs668973	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs670329	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs670421	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs672946	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs677845	1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs677878	0.81[JPT][hapmap]
rs677895	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs683227	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs683579	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs685521	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7181577	0.98[ASN][1000 genomes]
rs8023923	0.94[ASN][1000 genomes]
rs8030650	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8031735	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs8036917	0.86[ASN][1000 genomes]
rs8108	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9783720	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv9245	chr15:42441849-42453572	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42448600-42453800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:42449000-42481800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:42449200-42453800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:42449200-42456000	Weak transcription	Stomach Mucosa	stomach
5	chr15:42449600-42468200	Strong transcription	Fetal Brain Female	brain
6	chr15:42450200-42468600	Strong transcription	Fetal Stomach	stomach
7	chr15:42450200-42472400	Strong transcription	Fetal Intestine Small	intestine
8	chr15:42450400-42457000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:42450400-42468400	Strong transcription	Primary T cells from cord blood	blood
10	chr15:42450400-42468400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr15:42450400-42476600	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:42450600-42457400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:42450600-42460800	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:42450600-42463400	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:42450600-42468000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:42450600-42468200	Strong transcription	Brain Germinal Matrix	brain
17	chr15:42450600-42479800	Weak transcription	Psoas Muscle	Psoas
18	chr15:42450600-42485000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:42450600-42486200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:42450600-42487400	Strong transcription	Primary B cells from cord blood	blood
21	chr15:42450800-42463400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:42450800-42471400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:42450800-42484000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:42450800-42485000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:42450800-42485200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:42451000-42460800	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr15:42451000-42460800	Strong transcription	HepG2	liver
28	chr15:42451000-42461000	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr15:42451000-42461000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:42451000-42461200	Strong transcription	Gastric	stomach
31	chr15:42451000-42461200	Strong transcription	Spleen	Spleen
32	chr15:42451000-42462000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:42451000-42462000	Strong transcription	Colonic Mucosa	Colon
34	chr15:42451000-42462400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:42451000-42462600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr15:42451000-42463200	Strong transcription	Adipose Nuclei	Adipose
37	chr15:42451000-42463400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr15:42451000-42463400	Strong transcription	GM12878-XiMat	blood
39	chr15:42451000-42463600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:42451000-42466000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:42451000-42466000	Strong transcription	Colon Smooth Muscle	Colon
42	chr15:42451000-42466000	Strong transcription	Pancreas	Pancrea
43	chr15:42451000-42468600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:42451000-42471000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:42451000-42479600	Strong transcription	Liver	Liver
46	chr15:42451000-42484000	Strong transcription	Placenta	Placenta
47	chr15:42451000-42484400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:42451000-42484800	Strong transcription	Fetal Intestine Large	intestine
49	chr15:42451000-42484800	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr15:42451000-42485000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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