Variant report

Variant rs636604
Chromosome Location chr15:42448659-42448660
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42436000-42452000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr15:42439400-42451200 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr15:42439400-42451800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr15:42441200-42450600 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr15:42441800-42451000 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr15:42444000-42451600 Weak transcription HUVEC blood vessel
7 chr15:42444400-42450400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr15:42444600-42450200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr15:42444800-42449800 Weak transcription Brain Inferior Temporal Lobe brain
10 chr15:42444800-42450200 Weak transcription Brain Substantia Nigra brain
11 chr15:42444800-42450200 Weak transcription HSMM muscle
12 chr15:42444800-42450600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr15:42444800-42450600 Weak transcription Brain Germinal Matrix brain
14 chr15:42444800-42451000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr15:42444800-42451000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr15:42444800-42451200 Weak transcription Aorta Aorta
17 chr15:42445000-42449800 Weak transcription Brain Anterior Caudate brain
18 chr15:42445000-42450000 Weak transcription Brain Cingulate Gyrus brain
19 chr15:42445000-42450000 Weak transcription Brain Hippocampus Middle brain
20 chr15:42445000-42450200 Weak transcription Muscle Satellite Cultured Cells --
21 chr15:42445000-42451400 Weak transcription Brain Angular Gyrus brain
22 chr15:42445400-42451000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr15:42445400-42451000 Weak transcription Right Atrium heart
24 chr15:42445600-42449000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr15:42445800-42450200 Weak transcription Psoas Muscle Psoas
26 chr15:42446000-42450000 Enhancers Right Ventricle heart
27 chr15:42446000-42451000 Weak transcription H9 Cell Line embryonic stem cell
28 chr15:42446200-42449400 Enhancers Left Ventricle heart
29 chr15:42446600-42448800 Enhancers Fetal Muscle Trunk muscle
30 chr15:42446600-42450400 Enhancers Fetal Thymus thymus
31 chr15:42446600-42451200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr15:42447000-42448800 Active TSS Lung lung
33 chr15:42447000-42449200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr15:42447200-42448800 Flanking Active TSS NHEK skin
35 chr15:42447200-42449200 Enhancers Pancreas Pancrea
36 chr15:42447600-42448800 Active TSS Rectal Smooth Muscle rectum
37 chr15:42447600-42449000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr15:42447600-42449000 Enhancers Fetal Muscle Leg muscle
39 chr15:42447600-42450400 Enhancers Fetal Heart heart
40 chr15:42447600-42451000 Weak transcription Adipose Nuclei Adipose
41 chr15:42447600-42451000 Weak transcription Spleen Spleen
42 chr15:42447800-42448800 Active TSS Duodenum Mucosa Duodenum
43 chr15:42447800-42448800 Active TSS Small Intestine intestine
44 chr15:42447800-42449000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr15:42447800-42449200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr15:42447800-42451400 Weak transcription Fetal Lung lung
47 chr15:42448000-42448800 Bivalent/Poised TSS Fetal Stomach stomach
48 chr15:42448000-42448800 Active TSS Gastric stomach
49 chr15:42448000-42449000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
50 chr15:42448000-42449000 Active TSS Rectal Mucosa Donor 31 rectum

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