Variant report

Variant	rs615023
Chromosome Location	chr15:42499539-42499540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:42499352-42500842	IMR90	lung:	n/a	n/a
2	POLR2A	chr15:42499280-42501003	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:42499463-42499576	GM12878	blood:	n/a	n/a
4	WRNIP1	chr15:42499297-42499649	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:42499481-42501095	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:42499157-42500927	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42498938..42502268-chr15:42564432..42567193,3	MCF-7	breast:
2	chr15:42471137..42473519-chr15:42498566..42500959,2	MCF-7	breast:
3	chr15:42498784..42500561-chr15:42840086..42841928,2	K562	blood:
4	chr15:42499099..42501734-chr15:42564008..42565710,2	K562	blood:
5	chr15:42498997..42501611-chr15:42508533..42512053,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261002	TF binding region
ENSG00000180979	Chromatin interaction
ENSG00000214013	Chromatin interaction
ENSG00000137814	Chromatin interaction
ENSG00000166887	Chromatin interaction
ENSG00000103978	Chromatin interaction

Extended variants
information (count: 214 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs10152909	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070363	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070367	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs11070368	0.82[CHB][hapmap]
rs11070369	0.82[CHB][hapmap]
rs11070371	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs11631756	0.82[CHB][hapmap]
rs11631823	0.82[CHB][hapmap]
rs11631922	0.82[CHB][hapmap]
rs11635876	0.82[CHB][hapmap]
rs11856797	0.82[CHB][hapmap]
rs11856807	0.82[CHB][hapmap]
rs12324804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12440779	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12441027	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs12442769	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12902924	0.82[CHB][hapmap]
rs12907489	0.82[CHB][hapmap]
rs12915387	0.92[ASN][1000 genomes]
rs12915946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12916523	0.82[CHB][hapmap]
rs12916792	0.82[CHB][hapmap]
rs12917071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1616957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1619537	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1626437	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1630294	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1659216	0.82[CHB][hapmap]
rs1659220	0.82[CHB][hapmap];0.86[GIH][hapmap]
rs1659221	0.82[CHB][hapmap]
rs1659224	0.82[CHB][hapmap]
rs1659226	0.82[CHB][hapmap]
rs1678987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1678988	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1678989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1678990	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1678995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1678996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1678998	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs1678999	0.82[CHB][hapmap]
rs1679000	1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1679001	0.96[ASN][1000 genomes]
rs1679008	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs1679011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1703748	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1703751	0.94[ASN][1000 genomes]
rs1703753	0.96[ASN][1000 genomes]
rs1712390	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.98[ASN][1000 genomes]
rs1712391	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs1712397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1712406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1712407	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs1712408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1712409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1712410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1712417	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1712420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1712422	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1712442	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2289297	0.82[CHB][hapmap]
rs2412671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2412674	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2412681	0.82[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap]
rs2412684	0.82[CHB][hapmap]
rs2412686	0.82[CHB][hapmap]
rs2412689	0.82[CHB][hapmap]
rs2412690	0.82[CHB][hapmap]
rs2412691	0.82[CHB][hapmap]
rs2412694	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs2412697	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs2412702	0.82[CHB][hapmap]
rs2578651	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs2620375	0.82[CHB][hapmap]
rs2620378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2620379	0.96[ASN][1000 genomes]
rs2620380	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2620381	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2620383	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2620387	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2663092	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2663096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677751	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28364400	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364462	1.00[GIH][hapmap]
rs28364475	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364491	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364495	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364503	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364504	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364508	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364509	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364511	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28364519	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs28767320	0.92[ASN][1000 genomes]
rs2899044	0.82[CHB][hapmap]
rs2928333	0.96[ASN][1000 genomes]
rs3736096	0.82[CHB][hapmap]
rs3736097	0.82[CHB][hapmap]
rs3743002	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs3743003	0.82[CHB][hapmap]
rs4244589	0.82[CHB][hapmap]
rs4556762	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4923934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4923935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4923936	0.82[CHB][hapmap]
rs4923937	0.82[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs4923938	0.82[CHB][hapmap]
rs4923939	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4923941	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924633	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924635	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4924636	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4924640	0.89[AFR][1000 genomes]
rs4924642	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs4924643	0.82[CHB][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes]
rs4924650	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924657	0.82[CHB][hapmap]
rs4924662	0.82[CHB][hapmap]
rs4924663	0.82[CHB][hapmap]
rs4924664	0.82[CHB][hapmap]
rs4924665	0.82[CHB][hapmap]
rs4924666	0.82[CHB][hapmap]
rs4924668	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924669	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs4924670	0.82[CHB][hapmap]
rs4924671	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs5029919	0.82[CHB][hapmap]
rs583541	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs588695	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs590540	0.96[ASN][1000 genomes]
rs593910	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs598441	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs602270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs603468	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs607959	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs609660	0.89[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs613090	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs613131	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs613157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs614733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs614774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs616071	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs618161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs627478	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs629255	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs633310	0.92[ASN][1000 genomes]
rs633483	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[ASN][1000 genomes]
rs635617	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[ASN][1000 genomes]
rs635669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs635690	0.98[ASN][1000 genomes]
rs635919	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs636604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs637445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs638240	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs641119	0.96[ASN][1000 genomes]
rs644627	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs645304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs647581	0.96[ASN][1000 genomes]
rs648720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493026	0.87[ASW][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs6493034	0.82[CHB][hapmap]
rs6493041	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs650910	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs652192	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs659354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs660033	0.96[ASN][1000 genomes]
rs663454	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[YRI][hapmap];0.96[ASN][1000 genomes]
rs665262	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs665718	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs668973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670329	1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs672946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67384392	0.87[AFR][1000 genomes]
rs677845	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677895	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs683227	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs683579	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs685521	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7161982	0.82[CHB][hapmap]
rs7163941	0.82[CHB][hapmap]
rs7164480	0.90[AFR][1000 genomes]
rs7167306	0.82[CHB][hapmap]
rs7168121	0.88[GIH][hapmap]
rs7169279	0.82[CHB][hapmap]
rs7169553	0.82[CHB][hapmap]
rs7170943	0.82[CHB][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs7173358	0.82[CHB][hapmap]
rs7177193	0.82[CHB][hapmap]
rs7181577	0.96[ASN][1000 genomes]
rs7183843	0.82[CHB][hapmap]
rs8023568	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs8023678	0.89[ASW][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap]
rs8023714	0.82[CHB][hapmap]
rs8023923	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8024390	0.82[CHB][hapmap]
rs8025364	0.82[CHB][hapmap]
rs8030650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8031735	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8036917	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8037627	0.82[CHB][hapmap];1.00[GIH][hapmap]
rs8043515	0.82[CHB][hapmap]
rs8108	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9783720	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9920851	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1054102	chr15:42493052-42528765	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42460000-42499800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:42476800-42499600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:42481200-42499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:42496800-42499800	Weak transcription	Lung	lung
5	chr15:42497600-42499600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr15:42497800-42499600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:42498200-42499600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:42498400-42499600	Enhancers	Primary B cells from peripheral blood	blood
9	chr15:42498600-42499600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:42498600-42499600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:42498600-42499600	Enhancers	Gastric	stomach
12	chr15:42498600-42499600	Flanking Active TSS	GM12878-XiMat	blood
13	chr15:42498600-42499800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:42498600-42499800	Enhancers	Small Intestine	intestine
15	chr15:42498800-42499600	Enhancers	Fetal Heart	heart
16	chr15:42498800-42499800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr15:42498800-42499800	Flanking Active TSS	Dnd41	blood
18	chr15:42498800-42500200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:42499000-42499600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:42499000-42499600	Enhancers	Primary B cells from cord blood	blood
21	chr15:42499000-42499600	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:42499000-42499600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:42499000-42499800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr15:42499000-42499800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:42499000-42499800	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr15:42499000-42500000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:42499000-42500000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:42499000-42500000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr15:42499200-42499600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:42499200-42499600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:42499200-42499600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:42499200-42499600	Flanking Active TSS	Fetal Kidney	kidney
33	chr15:42499200-42499600	Enhancers	Fetal Thymus	thymus
34	chr15:42499200-42499600	Flanking Active TSS	HepG2	liver
35	chr15:42499200-42499600	Flanking Active TSS	K562	blood
36	chr15:42499200-42499600	Flanking Active TSS	NHDF-Ad	bronchial
37	chr15:42499200-42499800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:42499200-42499800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr15:42499200-42499800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:42499200-42499800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:42499200-42499800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:42499200-42499800	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr15:42499200-42499800	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr15:42499200-42499800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr15:42499200-42499800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:42499200-42499800	Enhancers	Esophagus	oesophagus
47	chr15:42499200-42499800	Flanking Active TSS	Fetal Brain Female	brain
48	chr15:42499200-42499800	Flanking Active TSS	Psoas Muscle	Psoas
49	chr15:42499200-42499800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr15:42499200-42499800	Flanking Active TSS	Rectal Smooth Muscle	rectum

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