Variant report

Variant	rs4923935
Chromosome Location	chr15:42530233-42530234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs11070363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11070367	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs11070368	0.82[CHB][hapmap]
rs11070369	0.82[CHB][hapmap]
rs11070371	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs11631756	0.82[CHB][hapmap]
rs11631823	0.82[CHB][hapmap]
rs11631922	0.82[CHB][hapmap]
rs11635876	0.82[CHB][hapmap]
rs11856797	0.82[CHB][hapmap]
rs11856807	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs12324804	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12441027	0.82[CHB][hapmap]
rs12902924	0.82[CHB][hapmap]
rs12907489	0.82[CHB][hapmap]
rs12915946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12916523	0.82[CHB][hapmap]
rs12916792	0.82[CHB][hapmap]
rs12917071	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1616957	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626437	1.00[JPT][hapmap]
rs1630294	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1659214	1.00[YRI][hapmap]
rs1659215	0.92[YRI][hapmap]
rs1659216	0.82[CHB][hapmap];0.85[YRI][hapmap]
rs1659220	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs1659221	0.82[CHB][hapmap]
rs1659224	0.82[CHB][hapmap]
rs1659226	0.82[CHB][hapmap]
rs1678987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1678988	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1678989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1678995	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1678998	0.82[CHB][hapmap]
rs1678999	0.82[CHB][hapmap]
rs1679000	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1679008	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1679011	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1703748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1712390	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1712391	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1712397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1712407	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1712408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1712409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1712410	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1712417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1712420	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1712442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2289293	0.82[CHB][hapmap]
rs2289297	0.82[CHB][hapmap]
rs2412671	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2412681	0.82[CHB][hapmap]
rs2412684	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2412686	0.82[CHB][hapmap]
rs2412689	0.82[CHB][hapmap]
rs2412690	0.82[CHB][hapmap]
rs2412691	0.82[CHB][hapmap]
rs2412694	0.82[CHB][hapmap]
rs2412697	0.82[CHB][hapmap]
rs2412702	0.82[CHB][hapmap]
rs2578651	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs2620375	0.82[CHB][hapmap]
rs2620378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2620380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2620383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2620387	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2663096	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28364400	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs28364475	0.82[CHB][hapmap]
rs28364491	0.82[CHB][hapmap]
rs28364495	0.82[CHB][hapmap]
rs28364503	0.82[CHB][hapmap]
rs28364504	0.82[CHB][hapmap]
rs28364508	0.82[CHB][hapmap]
rs28364509	0.82[CHB][hapmap]
rs28364511	0.82[CHB][hapmap]
rs28364519	0.82[CHB][hapmap]
rs28364544	0.82[CHB][hapmap]
rs28364559	0.82[CHB][hapmap]
rs2899044	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs3736096	0.82[CHB][hapmap]
rs3736097	0.82[CHB][hapmap]
rs3743002	0.82[CHB][hapmap]
rs3743003	0.82[CHB][hapmap]
rs4244589	0.82[CHB][hapmap]
rs4556762	0.82[CHB][hapmap];0.92[YRI][hapmap]
rs4923934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4923936	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs4923937	0.82[CHB][hapmap]
rs4923938	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs4923939	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs4923941	0.82[CHB][hapmap]
rs4924633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4924636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924641	0.92[YRI][hapmap]
rs4924643	0.82[CHB][hapmap]
rs4924650	0.82[CHB][hapmap]
rs4924657	0.82[CHB][hapmap]
rs4924662	0.82[CHB][hapmap]
rs4924663	0.82[CHB][hapmap]
rs4924664	0.82[CHB][hapmap]
rs4924665	0.82[CHB][hapmap]
rs4924666	0.82[CHB][hapmap]
rs4924668	0.82[CHB][hapmap]
rs4924669	0.82[CHB][hapmap]
rs4924670	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs4924671	0.82[CHB][hapmap]
rs5029919	0.82[CHB][hapmap]
rs588695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs593910	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs598441	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs602270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs603468	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs607959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs609660	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs613090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs613131	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs613157	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs614733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs614774	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs615023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs621365	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs629255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs633483	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs635617	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs635919	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs636604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs637445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs638240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs644627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs645304	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs648720	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6493026	0.82[CHB][hapmap]
rs6493034	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs6493041	0.82[CHB][hapmap]
rs652192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs659354	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs663454	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs668973	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs670329	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs670421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs672946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs677845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs683227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs683579	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs685521	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7161982	0.82[CHB][hapmap];0.85[YRI][hapmap]
rs7163941	0.82[CHB][hapmap]
rs7167306	0.82[CHB][hapmap]
rs7169279	0.82[CHB][hapmap]
rs7169553	0.82[CHB][hapmap]
rs7170943	0.82[CHB][hapmap]
rs7173358	0.82[CHB][hapmap]
rs7177193	0.82[CHB][hapmap];0.80[YRI][hapmap]
rs7183843	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs8023568	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs8023678	0.82[CHB][hapmap]
rs8023714	0.82[CHB][hapmap]
rs8024390	0.82[CHB][hapmap]
rs8025364	0.82[CHB][hapmap];0.93[YRI][hapmap]
rs8030650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8031735	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs8037627	0.82[CHB][hapmap]
rs8043515	0.82[CHB][hapmap]
rs8108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9920851	0.82[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv1799961	chr15:42522773-42545863	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1832380	chr15:42522773-42545863	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1807328	chr15:42525300-42573278	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42500800-42563200	Weak transcription	Stomach Mucosa	stomach
2	chr15:42501000-42534800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:42501000-42536600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:42501000-42536800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:42501000-42538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:42501200-42532400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr15:42501800-42536800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:42502000-42535000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:42502200-42534000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:42502200-42536600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:42502800-42535200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:42502800-42536400	Strong transcription	Fetal Muscle Leg	muscle
13	chr15:42503200-42544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:42506800-42532000	Strong transcription	Placenta	Placenta
15	chr15:42508000-42532200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:42509400-42535200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:42511800-42536800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr15:42513200-42532200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:42513800-42534800	Strong transcription	Liver	Liver
20	chr15:42514000-42534800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:42514000-42535200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:42514200-42532400	Strong transcription	Adipose Nuclei	Adipose
23	chr15:42514200-42535200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:42514200-42535200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:42514400-42531800	Strong transcription	Primary T cells from cord blood	blood
26	chr15:42514400-42533600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr15:42514400-42534800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:42514400-42535000	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:42514400-42535000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:42514400-42536400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr15:42514400-42536400	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr15:42514400-42537200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:42514600-42535000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:42514800-42532000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:42515000-42535400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:42515000-42544600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:42515200-42534800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:42515400-42535400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:42515600-42530400	Strong transcription	NH-A	brain
40	chr15:42515600-42532600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:42515600-42535000	Strong transcription	Primary B cells from cord blood	blood
42	chr15:42515800-42532400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr15:42516000-42535200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr15:42519200-42536400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:42519200-42543800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:42519200-42543800	Weak transcription	Gastric	stomach
47	chr15:42519400-42532000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:42519400-42562800	Weak transcription	Fetal Heart	heart
49	chr15:42520200-42561000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:42521000-42551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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