Variant report

Variant	rs7182963
Chromosome Location	chr15:42604047-42604048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42565275..42567071-chr15:42601912..42604080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214013	Chromatin interaction
ENSG00000103978	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10518757	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11070367	1.00[JPT][hapmap]
rs11070368	1.00[JPT][hapmap]
rs11070369	1.00[JPT][hapmap]
rs11070371	1.00[JPT][hapmap]
rs11631756	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11631823	1.00[JPT][hapmap]
rs11631922	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11635876	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11637010	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11856797	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11856807	1.00[JPT][hapmap]
rs12324205	1.00[JPT][hapmap]
rs12441027	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12902924	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12907489	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12916523	1.00[JPT][hapmap]
rs12916792	1.00[JPT][hapmap]
rs1659214	1.00[JPT][hapmap]
rs1659216	1.00[JPT][hapmap]
rs1659221	1.00[JPT][hapmap]
rs1659223	1.00[JPT][hapmap]
rs1659224	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1659226	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1678998	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1678999	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2289293	1.00[JPT][hapmap]
rs2289297	1.00[JPT][hapmap]
rs2412681	1.00[JPT][hapmap]
rs2412684	1.00[JPT][hapmap]
rs2412686	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2412689	1.00[JPT][hapmap]
rs2412690	1.00[JPT][hapmap]
rs2412691	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2412694	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2412697	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2412702	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2578651	1.00[JPT][hapmap]
rs2620375	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28364400	1.00[JPT][hapmap]
rs28364475	1.00[JPT][hapmap]
rs28364491	1.00[JPT][hapmap]
rs28364503	1.00[JPT][hapmap]
rs28364508	1.00[JPT][hapmap]
rs28364509	1.00[JPT][hapmap]
rs2899044	1.00[JPT][hapmap]
rs2918458	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3736096	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3736097	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3743002	1.00[JPT][hapmap]
rs3743003	1.00[JPT][hapmap]
rs4244589	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4556762	1.00[JPT][hapmap]
rs4923936	1.00[JPT][hapmap]
rs4923937	1.00[JPT][hapmap]
rs4923938	1.00[JPT][hapmap]
rs4923939	1.00[JPT][hapmap]
rs4923941	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924641	1.00[JPT][hapmap]
rs4924642	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4924643	1.00[JPT][hapmap]
rs4924650	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924651	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924652	1.00[JPT][hapmap]
rs4924662	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924663	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924664	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924665	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924666	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924667	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924668	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924669	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4924670	1.00[JPT][hapmap]
rs4924671	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5029919	1.00[JPT][hapmap]
rs614774	1.00[CHB][hapmap]
rs6493026	1.00[JPT][hapmap]
rs6493034	1.00[JPT][hapmap]
rs6493041	1.00[JPT][hapmap]
rs7161982	1.00[JPT][hapmap]
rs7163941	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7167306	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7169279	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7169553	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7170943	1.00[JPT][hapmap]
rs7173358	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7177193	1.00[JPT][hapmap]
rs7183843	1.00[JPT][hapmap]
rs8023568	1.00[JPT][hapmap]
rs8023678	1.00[JPT][hapmap]
rs8023714	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8024390	1.00[JPT][hapmap]
rs8025364	1.00[JPT][hapmap]
rs8037100	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8037627	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8043515	1.00[JPT][hapmap]
rs9920851	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
2	chr15:42568400-42604600	Weak transcription	NH-A	brain
3	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
4	chr15:42568600-42630800	Weak transcription	Dnd41	blood
5	chr15:42573400-42635800	Weak transcription	Gastric	stomach
6	chr15:42573800-42605600	Weak transcription	Pancreas	Pancrea
7	chr15:42576200-42605800	Weak transcription	Esophagus	oesophagus
8	chr15:42576400-42620800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:42577800-42616200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:42582000-42613400	Weak transcription	HUVEC	blood vessel
11	chr15:42585400-42623600	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:42585600-42604400	Weak transcription	Fetal Kidney	kidney
13	chr15:42585600-42607600	Weak transcription	NHLF	lung
14	chr15:42586200-42613800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:42593800-42616000	Weak transcription	Hela-S3	cervix
16	chr15:42596600-42604800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:42596800-42609800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:42596800-42625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:42597000-42614600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:42597800-42621200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:42598600-42604400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr15:42598600-42604600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr15:42598600-42606000	Strong transcription	Liver	Liver
24	chr15:42598600-42606600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:42598600-42606600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:42598600-42606800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:42598600-42607000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:42598600-42607600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:42598600-42607800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr15:42598600-42608200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr15:42598600-42610600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:42598800-42604200	Strong transcription	Primary B cells from cord blood	blood
33	chr15:42598800-42604200	Strong transcription	Brain Hippocampus Middle	brain
34	chr15:42598800-42604800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:42598800-42605000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:42598800-42605200	Strong transcription	Adipose Nuclei	Adipose
37	chr15:42598800-42605800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:42598800-42606600	Strong transcription	Ovary	ovary
39	chr15:42599000-42604200	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:42599000-42604400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:42599000-42604800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:42599000-42604800	Strong transcription	Aorta	Aorta
43	chr15:42599000-42604800	Strong transcription	Fetal Muscle Leg	muscle
44	chr15:42599000-42606000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:42599000-42606200	Strong transcription	Lung	lung
46	chr15:42599000-42606200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr15:42599000-42606600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:42599000-42606600	Strong transcription	Left Ventricle	heart
49	chr15:42599000-42607000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:42599000-42607200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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